Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_L14
         (873 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88169-5|AAB42235.2|  367|Caenorhabditis elegans Hypothetical pr...   113   1e-25
U29381-1|AAA68751.2|  133|Caenorhabditis elegans Hypothetical pr...    48   9e-06
Z47075-1|CAA87382.2|  308|Caenorhabditis elegans Hypothetical pr...    43   2e-04
Z81548-1|CAB04464.1| 1217|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U64856-1|AAB04985.2|  429|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,...    28   7.6  

>U88169-5|AAB42235.2|  367|Caenorhabditis elegans Hypothetical
           protein T03F1.7 protein.
          Length = 367

 Score =  113 bits (273), Expect = 1e-25
 Identities = 61/149 (40%), Positives = 94/149 (63%), Gaps = 5/149 (3%)
 Frame = +3

Query: 438 RLPPLPSIKDVIKLYKLRALRELSQNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGIT 617
           RLPPLP+++D I +Y+LRA + LSQN+LM+  +  KI + +  I+   V E+GPGPGGIT
Sbjct: 6   RLPPLPALRDFIHMYRLRAKKILSQNYLMDMNITRKIAKHAKVIEKDWVIEIGPGPGGIT 65

Query: 618 RSIIRQAPKKLVLIEKDPRFLPSLELLADACRDKVDVDIITGDILKTD*SXFIPNDA--- 788
           R+I+     +L ++E D RF+P L+ LA+A   ++ +     D L+T+      N+    
Sbjct: 66  RAILEAGASRLDVVEIDNRFIPPLQHLAEAADSRMFIH--HQDALRTEIGDIWKNETARP 123

Query: 789 -KVHWLDPP-PPVHLIGNLPFSVSTILII 869
             V W D   P +H+IGNLPF++++ LII
Sbjct: 124 ESVDWHDSNLPAMHVIGNLPFNIASPLII 152


>U29381-1|AAA68751.2|  133|Caenorhabditis elegans Hypothetical
           protein F35D11.5 protein.
          Length = 133

 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 20/63 (31%), Positives = 42/63 (66%)
 Frame = +3

Query: 195 LKQAEIAYMKLIEERNRERVQKLQVISKRNRLTGFTIGAGVLGVYLYSIFAIKQETFLDD 374
           L + +  + K  E+ N+ERV+++   + +N ++   +   V+G+Y Y+++++KQETFL++
Sbjct: 55  LPRPQKRFAKQFEKVNQERVKEIFAKNYKNHISFAVLLGVVIGIYWYTMYSVKQETFLEE 114

Query: 375 FDE 383
            DE
Sbjct: 115 IDE 117


>Z47075-1|CAA87382.2|  308|Caenorhabditis elegans Hypothetical
           protein E02H1.1 protein.
          Length = 308

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
 Frame = +3

Query: 510 QNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSIIRQAPKKLVLIEKDPRFLPSL 689
           Q+ L  P +++ IV  S      TV EVGPG G +T  ++  A K ++  E DPR +  +
Sbjct: 30  QHILKNPGVVNAIVEKSALKATDTVLEVGPGTGNLTVKMLEVA-KTVIACEIDPRMIAEV 88

Query: 690 E--LLADACRDKVDVDIITGDILKTD 761
           +  ++    ++K+ V+   GD++K +
Sbjct: 89  KKRVMGTPLQNKLQVN--GGDVMKME 112


>Z81548-1|CAB04464.1| 1217|Caenorhabditis elegans Hypothetical
           protein F54F12.1 protein.
          Length = 1217

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +3

Query: 294 GFTIGAGVLGVYLYSIFAIKQETFLDDFDEPPXNTAVIMAVAKTALQIRLPPLPSIKDV 470
           G  +   ++GV L+ +F  K++   D  D+PP    V+  V      +   P P +K++
Sbjct: 746 GGLLVVAIIGVILFFVFFQKKKKKEDKPDDPPAPLPVLPPVVPAPAPVVPAPAPVVKEL 804


>U64856-1|AAB04985.2|  429|Caenorhabditis elegans Hypothetical
           protein T25F10.3 protein.
          Length = 429

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
 Frame = +3

Query: 168 ISGTQQDPVLKQAEIAYMKLIEERNRERVQKLQVISKRNRLTG----FTIGAGVLGVYLY 335
           ISGT    V+    +  M L+  ++R +VQ     S+R  +      + I  G  G    
Sbjct: 262 ISGTVFSLVMIVVLVVSMYLLM-KHRMQVQSQYTSSRREEMNRAAQIYGIERGGAGTTTI 320

Query: 336 SIFAIKQETFLDDFDEPPXNTAVIMAVAKTALQIRLPPLPSIKDVIK 476
           S   I+   F+    +PP       AV++TA +  LPPLPS +D  K
Sbjct: 321 SRDDIRILPFVAAGIQPPPP----YAVSRTARREALPPLPSYEDATK 363


>U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,
           class iii (c) protein1 protein.
          Length = 1400

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/51 (35%), Positives = 30/51 (58%)
 Frame = +3

Query: 354 QETFLDDFDEPPXNTAVIMAVAKTALQIRLPPLPSIKDVIKLYKLRALREL 506
           ++TFL   +      A+I A AK   +IR+PP P+I+  ++L+  + L EL
Sbjct: 551 KDTFLPRAEVYRFAAALIDASAKKQTKIRIPP-PAIRRPVELWTGKQLIEL 600


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,230,420
Number of Sequences: 27780
Number of extensions: 401468
Number of successful extensions: 961
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)