Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_L11
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces pom...    26   6.4  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    26   6.4  

>SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 134 LSRGSKNDMNISVLGSVLD*SEGSSNQPE-WFTKVLGLSDK 253
           LS+ +  +    VL   LD   GSS   E WF  +LGL+D+
Sbjct: 43  LSKKTLRESLSCVLALPLDHVTGSSESMENWFYSILGLNDE 83


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 1/92 (1%)
 Frame = +3

Query: 210  TNPSGSPKF*GYQTKSTTWPTIFRSKPLTI*TRPTTPK-SLKEVTVLPN*SSDCVSHQTW 386
            T+PS SP   GY T     P+     P +    PT+P  S    +  P   S   +  ++
Sbjct: 1554 TSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSY 1613

Query: 387  L*PNAELCPCSRSVETSDPSWIVFKRLQKPTA 482
               +    P S S   + PS+        PT+
Sbjct: 1614 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1645


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,429,819
Number of Sequences: 5004
Number of extensions: 70241
Number of successful extensions: 181
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)