Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_L11
         (905 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    35   0.070
Z75531-4|CAA99805.1|  408|Caenorhabditis elegans Hypothetical pr...    32   0.65 
Z83221-5|CAB05706.2|  578|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z19158-1|CAA79574.1|  788|Caenorhabditis elegans Hypothetical pr...    29   6.0  

>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 35.1 bits (77), Expect = 0.070
 Identities = 17/46 (36%), Positives = 29/46 (63%)
 Frame = +3

Query: 303  TRPTTPKSLKEVTVLPN*SSDCVSHQTWL*PNAELCPCSRSVETSD 440
            T P++P+SL ++T+ P+ S    S QT L P++   P + SV +S+
Sbjct: 1964 TNPSSPRSLSQITITPSPSQSTESTQTSL-PSSSPSPSTHSVSSSE 2008


>Z75531-4|CAA99805.1|  408|Caenorhabditis elegans Hypothetical
           protein C54D10.4 protein.
          Length = 408

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -2

Query: 619 HSVVRSFLFSVYLVEDRVQDVSLCCCSYPHVVD 521
           H  V S L + YL+ DRVQ    CCC Y   +D
Sbjct: 263 HLPVTSSLMNQYLIADRVQR-RYCCCGYNGAID 294


>Z83221-5|CAB05706.2|  578|Caenorhabditis elegans Hypothetical
           protein C49A1.9 protein.
          Length = 578

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 163 VHIIFTSSTKRYFGEXSNNDLLYLSGDFFNLXSEYKI 53
           VH +F   T+ +F   S  DLL      FN  S++ I
Sbjct: 401 VHKLFEKPTEAFFSRVSEFDLLIFESKLFNFLSDWLI 437


>Z19158-1|CAA79574.1|  788|Caenorhabditis elegans Hypothetical
           protein T23G5.1 protein.
          Length = 788

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 5/129 (3%)
 Frame = +2

Query: 230 KVLGLSDKIHYVADNIPIKAI---DY--LNKANYTEVIERGHGAPELVVRLCVTSNVALA 394
           ++LG ++ I     NI  + +   D+  +N     +++ERG    E+  RL + +N ++ 
Sbjct: 615 QILGNNESIEPYTSNIYSRRVLSGDFQIVNPHMLKDLVERGLWTDEMKNRL-IANNGSI- 672

Query: 395 KCRAMSVFAFSRDIRPILDCVQEASETDCLKSVQDNGSDLASVDDMRVAAAAKGYVLHPV 574
                ++     DI+ +   V E S+ D ++   D G+ +     + +  A   Y     
Sbjct: 673 ----QNIDGIPSDIKELYRTVWEISQKDIIEMAADRGAYIDQSQSLNIHMAKPSYAGITS 728

Query: 575 FHEVYGEKK 601
            H  YG KK
Sbjct: 729 MH-FYGWKK 736


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,999,653
Number of Sequences: 27780
Number of extensions: 394440
Number of successful extensions: 852
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)