Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_L09
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...   128   1e-30
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    27   4.8  
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo...    26   6.3  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    26   6.3  
SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subuni...    26   8.4  
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy...    26   8.4  

>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score =  128 bits (308), Expect = 1e-30
 Identities = 62/103 (60%), Positives = 77/103 (74%)
 Frame = +2

Query: 176 ETNSVDNAWAMKIPKFTPDDNPHGLLEESKFATLFPKYREQYLKECWPLVQKILSEHHIV 355
           +T+ +D+ W  KI  FT DD+    LEES FATLFPKYRE+YL+E WP V + L +  I 
Sbjct: 27  DTDDIDH-W--KIEPFTKDDSKESFLEESSFATLFPKYREKYLREVWPHVTRALDKFGIT 83

Query: 356 AELDLIEGSLTVKTTRKTWDPYIIIKARDFMKLLSRSVPFEQA 484
             LDL+EGS+TVKTTRKT+DPY I+ ARD +KLL+RSVPF QA
Sbjct: 84  CVLDLVEGSMTVKTTRKTFDPYSILDARDLIKLLARSVPFPQA 126



 Score =  104 bits (250), Expect = 1e-23
 Identities = 52/99 (52%), Positives = 67/99 (67%), Gaps = 1/99 (1%)
 Frame = +1

Query: 520 LLKLIHLFAKKKPF*XXXXXXXXXXXVTLKSIELLTECYVLVQGNTVSAVGPYKGLVQVR 699
           ++K+ ++   K+ F             TLK++ELLT+CY+LVQG TV+ +G YKGL +VR
Sbjct: 138 IIKIGNILRNKERFVKRRQRLIGTNGQTLKALELLTQCYILVQGTTVAVMGGYKGLKEVR 197

Query: 700 RIVEDTMKNIHPMYNIKSLMIKREX*KTQA-KNESWDRF 813
           RIVED M NIHP+Y+IK LMIKRE  K     NESWDRF
Sbjct: 198 RIVEDCMHNIHPIYHIKELMIKRELAKDPTLANESWDRF 236



 Score = 49.6 bits (113), Expect = 6e-07
 Identities = 21/39 (53%), Positives = 28/39 (71%)
 Frame = +3

Query: 492 VLDDEIGCDIIKINSFVRKKETFLKRRQRLIGPQGCYIK 608
           ++ D + CDIIKI + +R KE F+KRRQRLIG  G  +K
Sbjct: 129 IMQDGVACDIIKIGNILRNKERFVKRRQRLIGTNGQTLK 167


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 128 SLLATLNLIKTNMEVEETNSVDNAWAMKIP 217
           S L TL+ I    +  ET   ++AW  KIP
Sbjct: 221 SNLVTLSKIMRQADASETGGQNSAWKQKIP 250


>SPBC1604.20c |tea2|klp4|kinesin-like protein
           Tea2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = +2

Query: 83  LNKFLFSSLFNKKIISLLATLNLIKTNMEVEETNSV 190
           L + L  SL  +  ISLLAT++ I++N  +E TN++
Sbjct: 417 LTRLLQQSLSGQSQISLLATIS-IESNHTMETTNTL 451


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +2

Query: 257 ESKFATLFPKYREQYLKECWPLVQKILSEHHIVAELDLIEGSLTVKTTRKTWDPY 421
           ES+F+ L   +R+ Y+K        I ++ H V   +L+      +  RK ++ Y
Sbjct: 138 ESRFSRLEEAFRDFYIKNLEKTEDLIRTDSHFVLNKELLSFRNDYEHRRKHYEKY 192


>SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 150

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 272 TLFPKYREQYLKECWPLVQKILSE 343
           T+ P Y  QYLK+   L+QK LSE
Sbjct: 3   TIVP-YSHQYLKDICQLIQKDLSE 25


>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 269 ATLFPKYREQYLKECWPLVQKILSEHHIVAELDLIEG 379
           A + P+Y+EQY +E    + K+++E  I  + D+ +G
Sbjct: 290 ANILPQYQEQYFEE----MPKLIAEGKIKYKCDVYDG 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,179,496
Number of Sequences: 5004
Number of extensions: 60864
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)