Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_L09
         (898 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0225 - 15995436-15995555,15995655-15995735,15995813-159959...   103   2e-22
01_06_0480 + 29639124-29639412,29639476-29639552,29639639-296397...    95   2e-21
11_06_0700 - 26404490-26404747,26405081-26405154,26405420-264054...    29   6.6  
12_01_0180 - 1335825-1335980,1336584-1336670,1336767-1336859,133...    28   8.8  

>10_08_0225 -
           15995436-15995555,15995655-15995735,15995813-15995956,
           15996305-15996386,15996479-15996561,15996655-15996759,
           15996869-15996907,15997004-15997060,15997701-15997769,
           15997959-15998069,15998382-15998564
          Length = 357

 Score =  103 bits (247), Expect = 2e-22
 Identities = 53/105 (50%), Positives = 71/105 (67%), Gaps = 2/105 (1%)
 Frame = +1

Query: 505 KLDATLLKLIHLFAKKKPF*XXXXXXXXXXXVTLKSIELLTECYVLVQGNTVSAVGPYKG 684
           ++   ++K+  +   K+ F             TLK+IE+LT CY+LVQGNTV+A+G +KG
Sbjct: 106 EMSCDIIKIGSIIRNKERFVKRRERLLGPNLSTLKAIEILTGCYILVQGNTVAAMGSWKG 165

Query: 685 LVQVRRIVEDTMKNI-HPMYNIKSLMIKREX*KTQA-KNESWDRF 813
           L QVRR+VED +KNI HP+Y+IK L+IKRE  K  A  NESWDRF
Sbjct: 166 LKQVRRVVEDCIKNIKHPVYHIKELLIKRELAKNPALANESWDRF 210



 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 27/38 (71%), Positives = 33/38 (86%)
 Frame = +2

Query: 371 IEGSLTVKTTRKTWDPYIIIKARDFMKLLSRSVPFEQA 484
           +EGS+TV TTRKT DPYII+KA++ +KLLSRSVP  QA
Sbjct: 62  VEGSMTVSTTRKTRDPYIIVKAKELIKLLSRSVPAPQA 99



 Score = 53.2 bits (122), Expect = 3e-07
 Identities = 21/35 (60%), Positives = 29/35 (82%)
 Frame = +3

Query: 486 LXVLDDEIGCDIIKINSFVRKKETFLKRRQRLIGP 590
           + +L+DE+ CDIIKI S +R KE F+KRR+RL+GP
Sbjct: 100 IKILNDEMSCDIIKIGSIIRNKERFVKRRERLLGP 134


>01_06_0480 +
           29639124-29639412,29639476-29639552,29639639-29639749,
           29639944-29640012,29640650-29640706,29640814-29640852,
           29640957-29641061,29641158-29641240,29641333-29641414,
           29641760-29641903,29641987-29642067,29642166-29642294
          Length = 421

 Score = 94.7 bits (225), Expect = 9e-20
 Identities = 48/105 (45%), Positives = 69/105 (65%), Gaps = 2/105 (1%)
 Frame = +1

Query: 505 KLDATLLKLIHLFAKKKPF*XXXXXXXXXXXVTLKSIELLTECYVLVQGNTVSAVGPYKG 684
           ++   ++K+  +   K+ F             TLK+IE+LT CY+LVQGNT +A+G +KG
Sbjct: 167 EMSCAIIKIGSIIRNKERFVKRRGRLLGPNLSTLKAIEILTGCYILVQGNTAAAMGYWKG 226

Query: 685 LVQVRRIVEDTMKNI-HPMYNIKSLMIKREX*KTQA-KNESWDRF 813
           L QV R+VED +KN+ HP+Y+IK L+IKRE  K  A  +ESWD+F
Sbjct: 227 LKQVVRVVEDCIKNVKHPVYHIKELLIKRELVKNPALAHESWDKF 271



 Score = 85.4 bits (202), Expect(2) = 2e-21
 Identities = 39/64 (60%), Positives = 50/64 (78%)
 Frame = +2

Query: 293 EQYLKECWPLVQKILSEHHIVAELDLIEGSLTVKTTRKTWDPYIIIKARDFMKLLSRSVP 472
           ++YL+E WP+V+  L E  +  EL+L+EGS+TV TTRKT DPYIIIKA + +KLLSRSVP
Sbjct: 97  KKYLQEAWPIVKGALKEFGVACELNLVEGSMTVSTTRKTKDPYIIIKANELIKLLSRSVP 156

Query: 473 FEQA 484
             QA
Sbjct: 157 APQA 160



 Score = 48.4 bits (110), Expect = 8e-06
 Identities = 20/35 (57%), Positives = 27/35 (77%)
 Frame = +3

Query: 486 LXVLDDEIGCDIIKINSFVRKKETFLKRRQRLIGP 590
           + +L+DE+ C IIKI S +R KE F+KRR RL+GP
Sbjct: 161 IKILNDEMSCAIIKIGSIIRNKERFVKRRGRLLGP 195



 Score = 35.5 bits (78), Expect(2) = 2e-21
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +2

Query: 209 KIPKFTPDDNPHGLLEESKFATLFPKYR 292
           KI +F P  N  G+LE + F+TLFP+YR
Sbjct: 41  KIEEFDPSWNEGGMLEVTSFSTLFPQYR 68


>11_06_0700 -
           26404490-26404747,26405081-26405154,26405420-26405476,
           26406072-26406135
          Length = 150

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -2

Query: 282 GNNVANLLSSKRPCGLSSGVNLGIFIAQALSTELVSSTSILVFIKFSV-ASKEMIFLLKR 106
           G N     S K    L   V L IF++    T+L ++  +LV +K  +   KE IF++ +
Sbjct: 43  GKNTVGTESLKVEFSLDCTVTLVIFLSTLNPTKLQATEMLLVLLKKEIKGDKEQIFVISK 102


>12_01_0180 -
           1335825-1335980,1336584-1336670,1336767-1336859,
           1336985-1337057,1337153-1337247,1337917-1338004,
           1338135-1338424
          Length = 293

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
 Frame = +2

Query: 80  ILNKFLFSSLFNKKIISLLATL----NLIKTNMEVEETNSVDNAWAMKIP 217
           +L++F+FS +F    +SLL TL    +L+   ++ E  +SV   W + IP
Sbjct: 179 LLDQFIFSPIFIGVFMSLLVTLEGKPSLVVPKLKQEWLSSVIANWQLWIP 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,778,613
Number of Sequences: 37544
Number of extensions: 329989
Number of successful extensions: 642
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)