Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_L09
         (898 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016430-3|AAB65369.1|  370|Caenorhabditis elegans Hypothetical ...   143   1e-34
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ...    32   0.48 
U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase ...    29   3.4  

>AF016430-3|AAB65369.1|  370|Caenorhabditis elegans Hypothetical
           protein C05C8.2 protein.
          Length = 370

 Score =  143 bits (347), Expect = 1e-34
 Identities = 63/100 (63%), Positives = 83/100 (83%)
 Frame = +2

Query: 191 DNAWAMKIPKFTPDDNPHGLLEESKFATLFPKYREQYLKECWPLVQKILSEHHIVAELDL 370
           D  W   I  F+ +DNP+GLL+ES F++LFPKYRE+Y+KE WPL++K L EH + A+LDL
Sbjct: 41  DAEW-WDINTFSKEDNPNGLLQESSFSSLFPKYREKYIKESWPLIEKALGEHFLKADLDL 99

Query: 371 IEGSLTVKTTRKTWDPYIIIKARDFMKLLSRSVPFEQASR 490
           +EG++ V+TTRKTWDPYII+KAR+ +KLLSRSVP+EQA R
Sbjct: 100 LEGTMCVRTTRKTWDPYIIMKAREVIKLLSRSVPYEQAIR 139



 Score =  101 bits (241), Expect = 9e-22
 Identities = 50/114 (43%), Positives = 70/114 (61%), Gaps = 1/114 (0%)
 Frame = +1

Query: 520 LLKLIHLFAKKKPF*XXXXXXXXXXXVTLKSIELLTECYVLVQGNTVSAVGPYKGLVQVR 699
           ++K+  +   K+ F             TLK++ELLT+CYV VQG TV AVGP  GL Q+ 
Sbjct: 149 IIKISSMVRNKERFVKRRARLIGNDGATLKALELLTQCYVCVQGGTVCAVGPLAGLKQIN 208

Query: 700 RIVEDTMKNIHPMYNIKSLMIKREX*KT-QAKNESWDRFCXHXEQNVPGSTKXK 858
           +IV D MKNIHP+YNIK++MIKRE  K  + K+ +WD +  +  + V  +T  K
Sbjct: 209 QIVTDCMKNIHPIYNIKTMMIKRELSKNDELKDANWDAYLPNYRKKVQSATTTK 262



 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 25/41 (60%), Positives = 31/41 (75%)
 Frame = +3

Query: 486 LXVLDDEIGCDIIKINSFVRKKETFLKRRQRLIGPQGCYIK 608
           + VL+DEI C+IIKI+S VR KE F+KRR RLIG  G  +K
Sbjct: 138 IRVLEDEIYCEIIKISSMVRNKERFVKRRARLIGNDGATLK 178


>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
           protein Y32B12B.4 protein.
          Length = 1528

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
 Frame = -2

Query: 330 FCTKGQHSFRYCSRYFG---NNVANLLSSKRPCGLSSGVNLGIFIAQALSTELVSSTSIL 160
           F   G+H    C+++     N +   L  K P  L   +N    I+    T +     + 
Sbjct: 672 FADSGRHRIYICTQHIADALNQIFGFLHLKSPADLYRMINSCDEISNLFKTAIDRCPDLP 731

Query: 159 VFIKFSVASKEMIFLLKRLEKRNLFRIRN 73
              +F   S   +  L +  KRNL+R+RN
Sbjct: 732 DLPEFGELSANFVNELCKFVKRNLWRVRN 760


>U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase c
            protein 2, isoformc protein.
          Length = 936

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 20/76 (26%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
 Frame = +2

Query: 89   KFLFSSLFNKKIISLLATLNLIKTNMEVEETNSVDNAWAMKIPKFTPDDNPHGL-LEESK 265
            KFLF + F++   + +  L  +K+    ++T++ D+ +  ++PK TP D    + L++++
Sbjct: 867  KFLFKNNFSQSPYNKIKVL--LKS---ADDTSNFDSEFTHEVPKLTPIDRLFLMNLDQTE 921

Query: 266  FATLFPKYREQYLKEC 313
            F   F     +Y++EC
Sbjct: 922  FEG-FSFVNPEYVQEC 936


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,139,662
Number of Sequences: 27780
Number of extensions: 323719
Number of successful extensions: 780
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)