Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_L08
         (911 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical pr...    31   0.86 
U50301-11|AAB37048.1|  269|Caenorhabditis elegans Hypothetical p...    28   8.1  
AF106576-2|AAC78180.1|  241|Caenorhabditis elegans Hypothetical ...    28   8.1  

>Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical protein
            T16G12.5 protein.
          Length = 1142

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +2

Query: 161  PKEDNSLNTLAESAKKTIEELREKVESALAP----ETVKKNFGTMVDSFNEFYKNL 316
            P ED S N   + AKK + +L+  V    AP     T ++ +   VD  NE+ + L
Sbjct: 834  PSEDVSFNLAVDEAKKLLRDLKIDVNQVNAPTLPQRTDRQRYNQQVDVCNEWIEEL 889


>U50301-11|AAB37048.1|  269|Caenorhabditis elegans Hypothetical
           protein F20D6.1 protein.
          Length = 269

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +2

Query: 299 EFYKNLKPAXSTESLRSNFLVSKYITPNISNVIMFSTLLN 418
           EFY N+K       +  N ++S+Y+   +S V+ F+ +++
Sbjct: 5   EFYINIKKKKRKNDIFENSIISRYLETILSLVVTFNRVIS 44


>AF106576-2|AAC78180.1|  241|Caenorhabditis elegans Hypothetical
           protein W07E6.5 protein.
          Length = 241

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 123 QIANKIISSVVHFGYLRTSFNXIQNLXGIPHN 28
           Q+A  +  SVV FG+L+ S N +  +  +P N
Sbjct: 196 QLAFSLQFSVVRFGFLKNSLNKVILISNVPSN 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,603,047
Number of Sequences: 27780
Number of extensions: 269923
Number of successful extensions: 687
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)