Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_L07
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    28   1.5  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    27   4.7  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    26   6.2  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    26   8.2  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   8.2  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    26   8.2  

>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 557 FFLFSFGTSALTSASVFGSRYSSISGDSVSVPISWTRRLEASFL 426
           F + S  T  L   S   S  + +S +  S+ I W+ R+ ASFL
Sbjct: 457 FAIHSAHTLGLEHGSTDNSTLNEVSTEETSIRICWSLRVLASFL 500


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1151

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 566  GQSFFLFSFGTSALTSASVFGSR-YSSISG 480
            G  F LFSF   AL   S+FG R Y+ + G
Sbjct: 1112 GMDFMLFSFWLPALLLLSIFGLRSYAQMIG 1141


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = -1

Query: 535 LQP*LPLLYSVHDILRFLVILFQCRYRGLVVWKLLSCNASKAWSPLRRK*PHHHV 371
           ++P + + +    +L F  +   C YRG  V     C     W+PL+ +  H+ V
Sbjct: 216 VKPSMIMPFGKRGLLVFESLFIHCMYRGNFVTINGPCTTYMHWTPLKGQKMHYIV 270


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = +1

Query: 442 KRRVHDIGTETESP-EIEEYREPNTE---AEVKAEVPKENRKK 558
           + R+H    E ES  E+    EP+ +   AE+  +VPKE R+K
Sbjct: 25  RARLHRSVREQESSSEVHANPEPDNQDSNAEILIDVPKEERQK 67


>SPCC1235.05c |fft2||fun thirty related protein
            Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 457  DIGTETESPEIEEYREPNTEAEVKAEVPKENRK 555
            +I  + E PEIEE ++P+   +V   + +E  K
Sbjct: 1239 NIDGQLEKPEIEESKKPDVLNQVSLSIEEEKPK 1271


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 91  IETHVFNEFKFEPSYDLMKYVNGIVQREWMRIKTG 195
           +ETH+         Y+L++Y   IV R ++ I  G
Sbjct: 30  LETHLNGTHNLMDLYELVQYAGSIVPRLYLMITVG 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,260,223
Number of Sequences: 5004
Number of extensions: 65791
Number of successful extensions: 188
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)