Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_L07
(886 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0176 + 16010806-16011095,16011983-16012061,16012389-160124... 31 1.2
11_06_0023 - 19325966-19326046,19326132-19326248,19326635-193267... 31 1.6
06_01_1190 + 10231166-10231222,10231318-10234122 30 2.1
01_06_1191 - 35297005-35297473,35297812-35298965 30 2.1
04_04_0076 + 22558105-22558261,22558356-22558405,22559837-225600... 29 3.8
11_06_0313 + 22306497-22308938 29 5.0
07_01_0025 - 172742-173260,174559-174621,174701-174763,174852-17... 29 6.6
06_01_0525 - 3800578-3801018,3801395-3801504,3801608-3801683,380... 29 6.6
04_03_0362 + 14934236-14934541,14935549-14935647,14935736-149357... 29 6.6
>02_03_0176 +
16010806-16011095,16011983-16012061,16012389-16012464,
16012541-16012630,16012878-16013031,16013172-16013181,
16013240-16013407,16014087-16014485,16014580-16014990
Length = 558
Score = 31.1 bits (67), Expect = 1.2
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Frame = +1
Query: 265 KPLSQYAPIEGRVSTKDYVISEADAKLTK-ELLMELEHGDGVTYGVVETKPLMHYKKEAS 441
+P+S PI+ R+ K+ I E D+K+++ ++L+ + T ET E
Sbjct: 449 QPISNAVPIQQRLPQKEVTIDEVDSKVSEGDILLSNQGYSSSTSSSDETADSGEKNVEDD 508
Query: 442 KRRVHDIGTETESPEIEEYREPNTEAE------VKAEVPKENRKKD*PMN 573
+ + E + + +P+ A+ + E PK + K+D P N
Sbjct: 509 EEFNTETSPEPSMETTDSHGQPDPSADGERFELRRRENPKIDEKRDMPPN 558
>11_06_0023 -
19325966-19326046,19326132-19326248,19326635-19326703,
19326922-19327119,19327388-19327591,19327688-19327828,
19328416-19328625,19329330-19329944
Length = 544
Score = 30.7 bits (66), Expect = 1.6
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +1
Query: 340 KLTKELLMELEHGDGVTYGVVETKPLMHYKKEASKRRVHDIGTETESPEIEEYREPNTEA 519
K+ KE+L+EL G V+E K L+ A+ + D ++E+YR T+
Sbjct: 452 KIGKEILIELIAKGGTVKSVIEEKDLVQIADPAAIEAMVDQVLADNPKQLEQYRSGKTKL 511
Query: 520 E--VKAEVPKENRKKD*PM 570
+ +V K ++ K P+
Sbjct: 512 QGFFAGQVMKASKGKANPV 530
>06_01_1190 + 10231166-10231222,10231318-10234122
Length = 953
Score = 30.3 bits (65), Expect = 2.1
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +1
Query: 376 GDGVTYGVVETKPLMHYKKEASKRRVHDIGTETESPEIE-EYREPNTEAEVKAEVPKE 546
G G G V T P S RR HD+G E E IE + +P +AE V E
Sbjct: 863 GLGQLEGEVNTHPNRPVLLMYSDRRYHDLGAEAEGSSIEVQTADPVPDAEGSVTVAVE 920
>01_06_1191 - 35297005-35297473,35297812-35298965
Length = 540
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 385 VTYGVVETKPLMHYKKEASKRRVHDIGTETESPEIEEYREPNTEAEVKAEVPKE 546
+ G+ + L ++ + R+HD+GT+ ES +E + A+ AEV KE
Sbjct: 250 IPVGLKIRETLTKIRETQRENRIHDLGTD-ESESVESVVVIDVAADANAEVAKE 302
>04_04_0076 + 22558105-22558261,22558356-22558405,22559837-22560044,
22560112-22560237,22560469-22560567,22560729-22561405,
22561483-22561731,22561808-22561936,22562021-22562089,
22562183-22562256,22563086-22563098,22563361-22563468,
22563541-22563651,22563725-22563811,22564043-22564068,
22564840-22564906,22565123-22565212,22565295-22565387,
22565515-22565604,22565699-22565761,22566349-22566447
Length = 894
Score = 29.5 bits (63), Expect = 3.8
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
Frame = +1
Query: 214 DLNKHLLMVDEWRISSVKPLSQYAPIEGRV-------STKDYVISEADAKLTKELLMELE 372
+L KH+L + E+ +SS+K Y E ++ KD +S +L ++E
Sbjct: 741 ELLKHILQIQEYSVSSIKRRDPYIRKEHQLQLVSPETKRKDVNLSGIIQSPITNMLRKVE 800
Query: 373 HGDGVTYGVVETKPLMH--YKKEASKRRVHDIGTETESPEIEEYREPNTEAEVKAEVPKE 546
G T + + + + H Y+ E + R+ +T+S + +EPNT+ + K+
Sbjct: 801 KG---TQDIPKHRKVTHHEYEVETANGRITK-RRKTKSTVMFGVQEPNTQKSLHDTADKD 856
Query: 547 NRK 555
K
Sbjct: 857 PTK 859
>11_06_0313 + 22306497-22308938
Length = 813
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 427 KKEASKRRVHDIGTETESPEIE-EYREPNTEAEVKAEVPKENRKK 558
+K RRV D G +T +P I+ +Y EP + +P++ ++K
Sbjct: 208 RKRGRPRRVQD-GADTSAPPIQSKYNEPVLQTPSAVTLPEDGKRK 251
>07_01_0025 -
172742-173260,174559-174621,174701-174763,174852-174950,
175792-175818,175946-176251
Length = 358
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -3
Query: 566 GQSFFLFSFGTSALTSASVFGSRY---SSISGDSV 471
G+SF L FG SAL S FG ++ ++S D V
Sbjct: 292 GKSFILSKFGKSALPSVRFFGDKFIRKETLSDDEV 326
>06_01_0525 -
3800578-3801018,3801395-3801504,3801608-3801683,
3801757-3801909,3802088-3802159,3802242-3802322,
3802936-3803001,3803117-3803182,3803277-3803327,
3803429-3803512,3803988-3804088,3804188-3804329,
3804820-3804917,3805194-3805263,3805409-3805477
Length = 559
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +1
Query: 418 MHYKKEASKRRVHDIGTETESPEIEEYREPNTEAEVKAEVPKE 546
+ YKKEA + PE E+ EP E VK E PKE
Sbjct: 304 IEYKKEAEEEEKPASPPPAPEPEPEQEPEPEPE-PVKEEAPKE 345
>04_03_0362 +
14934236-14934541,14935549-14935647,14935736-14935798,
14935878-14935940,14937242-14937362,14937472-14937872,
14937968-14938141,14938252-14938570,14938659-14938735,
14938808-14938877,14938951-14939007,14939100-14939314,
14939436-14939561,14939649-14939944,14940032-14940203,
14940300-14940398,14940471-14940602,14940692-14940792,
14941391-14941580,14941819-14941842
Length = 1034
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -3
Query: 566 GQSFFLFSFGTSALTSASVFGSRY---SSISGDSV 471
G+SF L FG SAL S FG ++ ++S D V
Sbjct: 248 GKSFILSKFGKSALPSVRFFGDKFIRKETLSDDEV 282
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,043,804
Number of Sequences: 37544
Number of extensions: 351507
Number of successful extensions: 831
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -