Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_L05
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    29   0.89 
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   3.6  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.6  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    27   4.7  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    27   4.7  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    27   4.7  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    27   4.7  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    27   4.7  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    26   6.3  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    26   8.3  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    26   8.3  

>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 27/101 (26%), Positives = 38/101 (37%), Gaps = 5/101 (4%)
 Frame = -1

Query: 854  AVGSTMSTDLDRSPVPGTVNEF----ALPFNCSVRAPPDTFEKQESTDAARSRFNSGTAK 687
            A G+T  T     P  GTV E     ++PF  ++ A   T    E          S T  
Sbjct: 1035 AQGTTSGTVEVVEPTAGTVTETIVSGSIPFTSTIPAQGTTSGTVEIVVPTAGTVTSTTGS 1094

Query: 686  *MSWTSESLAALATPSSDARTFSSELPV-GSTKKASCLDID 567
              SW + ++ A  T S      S   P   ST  A C +++
Sbjct: 1095 GTSWFTTTVPATGTRSGSVIVVSPTAPACSSTPFAECPNLN 1135



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/19 (68%), Positives = 13/19 (68%)
 Frame = +1

Query: 799  TVPGTGLRSRSVDXVLPTA 855
            TVP TG RS SV  V PTA
Sbjct: 1102 TVPATGTRSGSVIVVSPTA 1120


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
 Frame = -1

Query: 857 SAVGSTMSTDLDRSPVPGTVNEFALPFNCSVRAPPDTFEKQESTDAARSRFNSGTAK*MS 678
           S+  S+ S+    S    + +  ++P   S  +   +     S+ ++ SR +S ++   +
Sbjct: 184 SSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITT 243

Query: 677 WTSESLAALAT--PSSDARTFSSELP 606
            +S +  +  T  PSS + + SSE+P
Sbjct: 244 MSSSTFISTVTVTPSSSSSSTSSEVP 269


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = +1

Query: 712 DRAASVDSCFSKVSGGARTEQLNGSANSL----TVP-GTGLRSRSVDXVLPTAEQS 864
           +R +  ++CFSK S       +N   NSL    T P  TGL    +  V+ T++QS
Sbjct: 95  NRESMSENCFSKSSTNLPRLDINRDFNSLLNSQTKPEATGLMKEDITPVVNTSKQS 150


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 526 PPSDEPPIL--PQRRRSISRQEAFFVEPTGSSLEN 624
           PPS  PP+L  P R+ S   Q+ + + P+ S+ +N
Sbjct: 226 PPSPPPPVLHSPPRKVSAQEQQDWQIPPSISNWKN 260


>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +1

Query: 580  QEAFFVEPTGSSLENVRASEEGVASAARDSLVHDIYLAVPELK 708
            QEA   +   SS   V    E VAS A DSLV ++ ++ P+L+
Sbjct: 880  QEAILSQDISSSPSPVLPPSENVASYADDSLVSNLTMS-PKLR 921


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 10/40 (25%)
 Frame = -2

Query: 241 VPRDRCPSHPIQQ----------NRRSDCERRAAAQQAKR 152
           +PRDRCP   +QQ          +R +D ER+A  ++ KR
Sbjct: 253 LPRDRCPESVLQQALHEINIEFRSRLTDSERKALEEEDKR 292


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +1

Query: 187 SRSFDSAGSDDSGTYLEVPRLWSRRRSGKGTPPPCVHCRH 306
           S S +S G    GTY E P+L   R     TPP   + RH
Sbjct: 90  SNSSESNGITPMGTYSEKPKLLQSR-----TPPSSCYIRH 124


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 792 ICTTVQLFGSSSTRYFRETGINRRGAI 712
           IC ++     ++ R F ETG+ R+GAI
Sbjct: 374 ICISLSFSKRTTKRQFPETGLGRQGAI 400


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 22/85 (25%), Positives = 35/85 (41%)
 Frame = -1

Query: 821 RSPVPGTVNEFALPFNCSVRAPPDTFEKQESTDAARSRFNSGTAK*MSWTSESLAALATP 642
           ++PV  + NE+   F  S+  PP  F    ST+ ++      T    S  S   AA  T 
Sbjct: 124 QNPVVDSNNEYESKFRLSLEIPPTDF-LSTSTELSKRESCLSTETSSSKFSAVTAATITN 182

Query: 641 SSDARTFSSELPVGSTKKASCLDID 567
            + +   SS+       K + L+ D
Sbjct: 183 ETQSEKRSSQTDPSLPFKTNSLNCD 207


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 520 LQPPSDEPPILPQRRRSIS 576
           LQPPS +PP  P  +R  S
Sbjct: 69  LQPPSSQPPAPPTHQREAS 87


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -2

Query: 343 FVLRYDERATFPCGDNARMVVGCLYLICVGTTIAV 239
           F++ Y    T+ CG   R+V+     +C+   +A+
Sbjct: 394 FIIIYSVLGTYFCGVMVRLVLTLTPCVCIAAAVAI 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,268,376
Number of Sequences: 5004
Number of extensions: 64323
Number of successful extensions: 221
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)