Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_L05
(890 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1171 + 24880363-24881355,24882553-24882702,24883505-248842... 31 0.93
09_06_0229 + 21709510-21709532,21710021-21710041,21712386-21713577 31 1.6
06_03_0287 - 19168685-19168735,19168847-19168884,19169517-191697... 31 1.6
12_02_0119 + 13886982-13887323 30 2.1
12_02_0141 + 14303418-14303687,14304447-14304586,14304744-14305569 30 2.8
01_06_0125 + 26711157-26713297,26715026-26715206 30 2.8
03_06_0027 + 31131621-31131676,31131681-31132350,31133152-311333... 29 5.0
12_02_0956 + 24776359-24779085 29 6.6
08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378 29 6.6
03_02_0561 + 9466428-9466502,9466503-9467243,9467592-9467600 29 6.6
01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411 29 6.6
08_01_0118 + 947394-947885,948709-948810,948914-949219,949557-94... 28 8.7
02_05_1138 + 34379697-34380902 28 8.7
02_03_0197 - 16249988-16250509 28 8.7
>08_02_1171 +
24880363-24881355,24882553-24882702,24883505-24884210,
24885012-24885404,24885759-24885805,24886088-24886111
Length = 770
Score = 31.5 bits (68), Expect = 0.93
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 138 WLWHQRFACCAAARRSQSLLRFCW 209
WLW + FAC A+RRS L+ W
Sbjct: 638 WLWARWFACLHASRRSTCLVAAAW 661
>09_06_0229 + 21709510-21709532,21710021-21710041,21712386-21713577
Length = 411
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1
Query: 64 AGRVSEHHTRVRSASFDEIQLEAARGSGTSVLLAVPQP 177
AG H T +A D+I +A RGSG S+ A P P
Sbjct: 356 AGDWRNHMTPAMAARLDKIVDDATRGSGLSLANATPSP 393
>06_03_0287 -
19168685-19168735,19168847-19168884,19169517-19169727,
19171461-19171643,19171879-19172028,19172161-19172256,
19172378-19172464,19172535-19172741,19172823-19173047,
19173150-19173261,19173397-19173453,19175522-19176882
Length = 925
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = -1
Query: 281 GVPLPDLRRDHNRGTSR*VPESSDPAESKERLRAPGCGTASKTLVPEPRAASNWISSNDA 102
G PLP L +D R + ++ P R PG G A+K+L+ + S+WIS
Sbjct: 26 GPPLPGLLQDPLRNGAA----AAGPRFFSSRA-GPGAGAAAKSLIEDEAELSDWISDLKT 80
Query: 101 D 99
D
Sbjct: 81 D 81
>12_02_0119 + 13886982-13887323
Length = 113
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +3
Query: 117 DPVGGSAWLWHQRFACCAAA-RRSQSLLRFCW 209
D GGS+W W A AAA S LL CW
Sbjct: 5 DGAGGSSWHWRLPMAAAAAADTASGRLLAACW 36
>12_02_0141 + 14303418-14303687,14304447-14304586,14304744-14305569
Length = 411
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/54 (33%), Positives = 21/54 (38%)
Frame = +3
Query: 597 GAYRKFTRECSSVGRRSGKCGKGLARPRHLFGSARVKTRSRRVG*FLFLESIGW 758
G +FT G R K G+ A RH G R + R R F IGW
Sbjct: 13 GGLMRFTEARGVPGWRRPKLGRPGAAARHAAGGGRTEQRRREAVPATFQRWIGW 66
>01_06_0125 + 26711157-26713297,26715026-26715206
Length = 773
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +1
Query: 112 DEIQLEAARGSGTSVLLAVPQPGARSRSFDSAGSDDSGTYLEVPRLWSRRRSGK 273
+E ++EA RG+G+ V + P D A D+ T L + +LW RRR G+
Sbjct: 131 EEKEVEAGRGAGSRVPIIKEAP-------DDAEGDEDDT-LPLSQLWKRRRLGE 176
>03_06_0027 +
31131621-31131676,31131681-31132350,31133152-31133319,
31134771-31134986,31135593-31135909,31136058-31136169,
31136256-31136492,31136582-31137172
Length = 788
Score = 29.1 bits (62), Expect = 5.0
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Frame = +2
Query: 110 SMRSSWRQRVALAPAFCLLCRSPALAVAPSILLDRMTRAPISRYRDCG----PDADQVKA 277
S R + VA P C C P + S D++ +P D G P Q A
Sbjct: 50 SSRPAAAAAVAGPPGECYACTQPGVPSFHSTTCDQV-HSP-DWDADAGSSLVPVQAQPSA 107
Query: 278 PHHHACIVATWKRGSLVVAKNELPQK-DRWPLL 373
HH A A W G ++ +++ Q+ +RW LL
Sbjct: 108 AHHAAAAAARWVFGPVLDPRSKRVQRWNRWILL 140
>12_02_0956 + 24776359-24779085
Length = 908
Score = 28.7 bits (61), Expect = 6.6
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = -1
Query: 317 HVSMWRQCTHGGGVPLPDLRRDHNRGTSR*VPESSDPAESKERLR-APGCGTASKTLVPE 141
H+S+W+ +H V L R G DPA +LR A + +L P
Sbjct: 2 HLSLWKPLSHCAAVLLAKNHRRRGGGGGSNGHRGDDPASFLRQLRDALDAASEDGSLCPP 61
Query: 140 PRAASNWISSNDAD 99
P AA + DAD
Sbjct: 62 PDAAGAGADA-DAD 74
>08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378
Length = 477
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -1
Query: 287 GGGVPLPDLRRDHNRGTSR*VPESSDPAESKERLRAPGCGTASKT 153
GGG P R H RG + P S+D A S+ R R G T++ +
Sbjct: 54 GGGHGGPASPRHHLRGRGQAGPNSADHAASRGRGRRSGDATSASS 98
>03_02_0561 + 9466428-9466502,9466503-9467243,9467592-9467600
Length = 274
Score = 28.7 bits (61), Expect = 6.6
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = -1
Query: 287 GGGVPLPDLRRDHNRGTSR*VPESSDPAESKERLRAPGCGTASKTLVPE 141
GGG+ RR +RG R PES+ PA+ R R P G+ PE
Sbjct: 39 GGGLQRLPRRRPWSRGGGRAAPESTPPAK-YARGRRPRRGSGGHAPHPE 86
>01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411
Length = 885
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = -2
Query: 244 AVPRDRCPSHPIQQNRRSDCERRAAAQQAKRWCQSHALPPTGSHRMMPIGRECGVRSRGP 65
A+P+D H + +R S+C R ++ R + +L G+H + + G RS
Sbjct: 306 AMPKD----HKARTDRLSNCSRMRSSGAGVRAGEERSLRKRGTHSLQDVEGNIGSRSLVS 361
Query: 64 HTH 56
TH
Sbjct: 362 STH 364
>08_01_0118 +
947394-947885,948709-948810,948914-949219,949557-949616
Length = 319
Score = 28.3 bits (60), Expect = 8.7
Identities = 21/75 (28%), Positives = 31/75 (41%)
Frame = -1
Query: 242 GTSR*VPESSDPAESKERLRAPGCGTASKTLVPEPRAASNWISSNDADRTRVWCSLTRPA 63
GT V S DP R GCG + +PE R A N + D D + L+
Sbjct: 158 GTVLSVEISRDPETGLSR----GCGFVTMRSLPEARTAMNALDGFDLDGREMLVKLSSDV 213
Query: 62 HT*TQHLNLKEFPIV 18
+ +++N+ P V
Sbjct: 214 VSKRRNINMTHTPPV 228
>02_05_1138 + 34379697-34380902
Length = 401
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = +1
Query: 55 YVCAGRVSEHHTRVRSASFDEIQLEAARGSGTSVLLAVPQPGARSRSFDSAGSDDSGTYL 234
+V G + +A+ D+ A G T++LL +PQ A RS G +
Sbjct: 196 HVVGGFAESTSSSSPAAAADDEAAAAPPGRATALLLLLPQSSALERSSAEVFDCARGVWE 255
Query: 235 EVPRLW 252
+P +W
Sbjct: 256 IIPGMW 261
>02_03_0197 - 16249988-16250509
Length = 173
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/55 (32%), Positives = 21/55 (38%)
Frame = +1
Query: 124 LEAARGSGTSVLLAVPQPGARSRSFDSAGSDDSGTYLEVPRLWSRRRSGKGTPPP 288
L RG + AV PG SRS + G L R S RR + P P
Sbjct: 96 LPPRRGREAAATAAVTMPGRESRSHRQHNVGEGGQLLPPRREGSNRRRCRHAPTP 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,992,513
Number of Sequences: 37544
Number of extensions: 544370
Number of successful extensions: 2052
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2052
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -