Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_L05
         (890 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   1.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.6  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           22   8.6  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 97  GRECGVRSRGPHTHRPNI 44
           GR  G+R RGP  ++P +
Sbjct: 423 GRNAGLRYRGPKQNKPKV 440


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/60 (20%), Positives = 29/60 (48%)
 Frame = +2

Query: 515  SNCNPLVTSLLYYHKDVDRYLGKKPSLWSLQEVHSRMFERRKKEWQVRQGTRSSTTFIWQ 694
            S+ +   +S LY   +      +KP+ + L++   + + +R+KE    +G   +   I++
Sbjct: 953  SSSSSFYSSFLYKSSESSCNPDQKPTEYLLEDSMKQQYGKRRKEPPWLEGVHVTPELIYE 1012


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 833 TDLDRSPVPGTVNEFALPFN 774
           TD+DR  VPG+    A  FN
Sbjct: 922 TDIDRVLVPGSQQNVAGVFN 941


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 624 CSSVGRRSGKCGKGL 668
           C S+G+  G C KG+
Sbjct: 39  CHSLGKAGGHCEKGV 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,382
Number of Sequences: 438
Number of extensions: 5193
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)