Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_L03
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    30   0.39 
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    28   1.6  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    27   4.8  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   6.4  
SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom...    26   8.4  

>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 578 EQYERLARRVE---MRFDLESTGAWSSAVELALAATRPEHRARL 700
           +Q E L RRVE   +  + E T  W  A+ LAL+  RP    RL
Sbjct: 628 KQAEELERRVEAEQLLSNFEQTEDWQQAIALALSLDRPHGLLRL 671


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +2

Query: 146 AELQPLSSGGANYTSLLYRARLQA---PGRPDLRLFVKVAKMSENVRAHAIN 292
           A LQ L    +N+T L  +A + A   P R D+ LF+K     ENV  H ++
Sbjct: 425 ARLQRLFEFTSNFT-LRRKANILAKHLPPRTDIVLFIKPTHQQENVYGHVLD 475


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 22/80 (27%), Positives = 35/80 (43%)
 Frame = +2

Query: 218  PGRPDLRLFVKVAKMSENVRAHAINSVYDTELLVYEELSKLYRALEEERGVAEPERFVFP 397
            PGRP+ R  +K+    E     A+    D  LL  +    + RALE+E  +     F+  
Sbjct: 1150 PGRPETRHKLKLVTREEIKGTVAVVCEVDGYLLSGQGQKVIVRALEDEDHLVGVS-FIDL 1208

Query: 398  ALYGARSRRLEEALVLEDLR 457
              Y   ++ L   L+  D+R
Sbjct: 1209 GSYTLSAKCLRNLLLFGDVR 1228


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
 Frame = +2

Query: 194 LYRARLQAPGRPDLRLFVKVAKMSENVRAHAINSVYDTE--LLVYEELSKLYRALE-EER 364
           LY  ++     P L L  K A MS   + + +N   D     + +E  S  YR+ + +E 
Sbjct: 681 LYALKVLKLSVPFLGLKWKQANMSIITQIY-LNCSLDLRDSWMFHENGSDTYRSAQLQET 739

Query: 365 GVAEPERFVFPALYGARSRRLEEALVLEDLR 457
            +A   RF    LYG + + L +  +LE++R
Sbjct: 740 FLAILIRFYHIRLYGKKCKSLYQFCILEEMR 770


>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 171

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 200 RARLQAP-GRPDLRLFVKVAKMSENVRAHAINSVYDTELLVY 322
           RA LQ P GR  +R F+K AK   N+R  A ++VY   +L Y
Sbjct: 61  RAGLQFPVGR--VRRFLK-AKTQNNMRVGAKSAVYSAAVLEY 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,903,069
Number of Sequences: 5004
Number of extensions: 29649
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)