Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_L03
(902 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0392 + 21729501-21729895,21730198-21730312 31 0.95
02_05_0067 + 25557975-25558553 31 1.3
12_02_1099 - 26072301-26072468,26072642-26072751,26072966-260730... 30 2.9
01_06_0352 + 28638453-28639391,28639486-28640034,28640388-286411... 30 2.9
05_03_0428 + 13899295-13899669 29 3.8
11_06_0087 - 19919224-19922304 29 6.7
06_02_0035 + 10816723-10819497,10819964-10820011 29 6.7
05_05_0106 + 22435192-22435614,22436880-22436968,22437617-224378... 29 6.7
06_03_0853 - 25384198-25384731,25384810-25385210,25385816-25386011 28 8.8
01_06_0482 - 29672720-29673854,29673941-29676267 28 8.8
>01_05_0392 + 21729501-21729895,21730198-21730312
Length = 169
Score = 31.5 bits (68), Expect = 0.95
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 148 GHGAVVEPQASR-RGAQSWRGPAPRCPSCRARCP 50
GH V A+R R ++SW+ P RC CRA CP
Sbjct: 13 GHAGVCSVCAARIRSSRSWQ-PDLRCCICRAHCP 45
>02_05_0067 + 25557975-25558553
Length = 192
Score = 31.1 bits (67), Expect = 1.3
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 390 CSPRCTARGRGGSRKHWCWRTCARRGSAPATACAP-WTGSTRA 515
C+P T R SR H C C S P AC+P TGST+A
Sbjct: 40 CNPSGTLRP---SRSHSCQDCCKAGRSYPTYACSPATTGSTKA 79
>12_02_1099 -
26072301-26072468,26072642-26072751,26072966-26073014,
26073081-26073495,26073604-26074019
Length = 385
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -3
Query: 153 SSATAQ*WSRKHHVAEHRAGAVPLLGVRHVGLAVQAAKS*EFP 25
SSA WS + + G+VP GV + L QAA EFP
Sbjct: 15 SSAAGNIWSSQPSASGPSHGSVPRAGVDTLDLNTQAASGQEFP 57
>01_06_0352 +
28638453-28639391,28639486-28640034,28640388-28641195,
28641279-28641389,28641556-28641683
Length = 844
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -3
Query: 153 SSATAQ*WSRKHHVAEHRAGAVPLLGVRHVGLAVQAAKS*EFP 25
SSA WS + + G+VP GV + L QAA EFP
Sbjct: 15 SSAAGNIWSSQPSASGPSHGSVPRAGVDTLDLNTQAASGQEFP 57
>05_03_0428 + 13899295-13899669
Length = 124
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 420 GGSRKHWCWRTCARRGSAPATAC 488
GGSR+HW T +R +PA C
Sbjct: 78 GGSRRHWTCSTSSRSCRSPAPVC 100
>11_06_0087 - 19919224-19922304
Length = 1026
Score = 28.7 bits (61), Expect = 6.7
Identities = 19/65 (29%), Positives = 25/65 (38%)
Frame = +2
Query: 410 ARSRRLEEALVLEDLRASGFGPRDRLRPVDWEYACAAMEQLARLHALGFALQLQAPEQYE 589
ARS L + LR D DW A A + L LH +L + +Q+
Sbjct: 185 ARSSELSWLARMPSLRHLSLSSVDLSSARDWPLAIAMLPSLTALHLSSCSLPSSSTQQWR 244
Query: 590 RLARR 604
RL R
Sbjct: 245 RLLPR 249
>06_02_0035 + 10816723-10819497,10819964-10820011
Length = 940
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = -2
Query: 130 EPQASRRGAQSWRGPAPR-CPSCRARCPS 47
+PQA G W R CP+CR+ C S
Sbjct: 362 KPQAQTHGCCGWMTATARPCPACRSDCAS 390
>05_05_0106 +
22435192-22435614,22436880-22436968,22437617-22437814,
22438475-22438679,22438749-22438916,22439095-22439262,
22439344-22439534,22440776-22440879,22441285-22441298
Length = 519
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +3
Query: 411 RGRGGSRKHWCWRTCARRGSAPATACAPWTG 503
RG GGS + RT + GSA A+A A WTG
Sbjct: 33 RGGGGSGR----RTPGKGGSASASAAAGWTG 59
>06_03_0853 - 25384198-25384731,25384810-25385210,25385816-25386011
Length = 376
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 323 EELSKLYRALEEERGVAEPERFVFPALYGARSRRLEEALVL 445
EE K AL+EER E E+F F ++ ++EE +L
Sbjct: 328 EERCKRAFALQEERNKLEREKFEFQKKEAEKAEKVEEERIL 368
>01_06_0482 - 29672720-29673854,29673941-29676267
Length = 1153
Score = 28.3 bits (60), Expect = 8.8
Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 3/121 (2%)
Frame = +2
Query: 257 KMSENVRAHAINSV-YDTELLVYEELSKLYRALEEERGVAEPERFVFPALYGARSRRLEE 433
K V+A ++ +V D E + EL L L V EPE+F P + G RSRRL
Sbjct: 441 KKDSMVKAVSLPTVELDGEDQLDAELEDL-GCLINSLSVVEPEQFDSPIVEGKRSRRLSC 499
Query: 434 ALVLEDLRASGFGPRDRLRPVDWEY-ACAAMEQLARLHA-LGFALQLQAPEQYERLARRV 607
V E ++ R R ++ A + L H+ LG + ERL ++
Sbjct: 500 VGVTEGCNSASRMIRSRSMDASSDFVASEFLNMLGIEHSPLGATSGSDSESPRERLWKQF 559
Query: 608 E 610
E
Sbjct: 560 E 560
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,010,758
Number of Sequences: 37544
Number of extensions: 280761
Number of successful extensions: 1285
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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