Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_L02
         (976 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc...   118   9e-28
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom...   118   9e-28
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    31   0.25 
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    27   4.0  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    26   7.0  

>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
           L20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score =  118 bits (285), Expect = 9e-28
 Identities = 59/128 (46%), Positives = 76/128 (59%), Gaps = 1/128 (0%)
 Frame = +1

Query: 187 YKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXNNFGIWLRYESR 366
           ++MR+F+P+  VAKSR+WYFL+ + K KK TG                  FGIW+RY+SR
Sbjct: 24  FRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSR 83

Query: 367 SGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQXI-XVEVIXAAACRRPQVKQFH 543
           SG HNMY+E+RD +  GAV   Y DM ARHRAR  SI+ +  VEV      RR  VKQ  
Sbjct: 84  SGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLL 143

Query: 544 NSTIXIPI 567
           N  +  P+
Sbjct: 144 NPHLKFPL 151


>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
           protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score =  118 bits (285), Expect = 9e-28
 Identities = 59/128 (46%), Positives = 76/128 (59%), Gaps = 1/128 (0%)
 Frame = +1

Query: 187 YKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXNNFGIWLRYESR 366
           ++MR+F+P+  VAKSR+WYFL+ + K KK TG                  FGIW+RY+SR
Sbjct: 24  FRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSR 83

Query: 367 SGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQXI-XVEVIXAAACRRPQVKQFH 543
           SG HNMY+E+RD +  GAV   Y DM ARHRAR  SI+ +  VEV      RR  VKQ  
Sbjct: 84  SGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLL 143

Query: 544 NSTIXIPI 567
           N  +  P+
Sbjct: 144 NPHLKFPL 151


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 31.1 bits (67), Expect = 0.25
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +3

Query: 75  QSLSDKNSKNEGLKDS*GNMRLSAVSSRSEN 167
           +S S+ N K + LKDS G++  + VSSR +N
Sbjct: 417 RSSSENNKKEDDLKDSTGDLNTTQVSSRVDN 447


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = +3

Query: 384 VP*IP*PECRWSCHSVLQRYGS*TQSPSSFNTDXXSGSNQXCXVSPSTGQTVPQQHHLDS 563
           +P  P P    +  +VLQ++       SS +      SNQ   +SPST  +    HH  S
Sbjct: 68  LPPPPSPGILATSPAVLQKHQQEDSGNSSQSPTSPHPSNQPAMLSPSTAASQHHHHHSSS 127


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 203 SLRIQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFXRK 316
           S ++   P++V   S D+ + SRRP +  S  RKF  K
Sbjct: 295 SPKVSKRPSIVRQDSHDSNKLSRRPTINTSFDRKFSPK 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,283
Number of Sequences: 5004
Number of extensions: 41150
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 501293686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)