Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_L02
(976 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L05093-1|AAC18781.1| 176|Homo sapiens ribosomal protein L18a pr... 183 8e-46
BC071920-1|AAH71920.1| 176|Homo sapiens ribosomal protein L18a ... 183 8e-46
BC066319-1|AAH66319.1| 176|Homo sapiens ribosomal protein L18a ... 183 8e-46
BC007512-1|AAH07512.1| 176|Homo sapiens ribosomal protein L18a ... 183 8e-46
AK222647-1|BAD96367.1| 176|Homo sapiens ribosomal protein L18a ... 183 8e-46
AC005796-1|AAC62828.1| 176|Homo sapiens ribosomal protein L18a ... 183 8e-46
AY779046-1|AAX47571.1| 136|Homo sapiens ribosomal protein L18a-... 151 3e-36
X80822-1|CAA56788.1| 140|Homo sapiens protein ( H.sapiens mRNA ... 133 1e-30
AB007175-1|BAA28596.1| 66|Homo sapiens ribosomal protein L18a ... 69 2e-11
>L05093-1|AAC18781.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 183 bits (446), Expect = 8e-46
Identities = 84/133 (63%), Positives = 97/133 (72%)
Frame = +1
Query: 181 P*YKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXNNFGIWLRYE 360
P Y+MRIF+P+ +VAKSRFWYF+ QLKK KK++G NFGIWLRY+
Sbjct: 26 PLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYD 85
Query: 361 SRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQXIXVEVIXAAACRRPQVKQF 540
SRSG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQ + VE I A+ CRRP VKQF
Sbjct: 86 SRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQF 145
Query: 541 HNSTIXIPIXQTV 579
H+S I P+ V
Sbjct: 146 HDSKIKFPLPHRV 158
>BC071920-1|AAH71920.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 183 bits (446), Expect = 8e-46
Identities = 84/133 (63%), Positives = 97/133 (72%)
Frame = +1
Query: 181 P*YKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXNNFGIWLRYE 360
P Y+MRIF+P+ +VAKSRFWYF+ QLKK KK++G NFGIWLRY+
Sbjct: 26 PLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYD 85
Query: 361 SRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQXIXVEVIXAAACRRPQVKQF 540
SRSG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQ + VE I A+ CRRP VKQF
Sbjct: 86 SRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQF 145
Query: 541 HNSTIXIPIXQTV 579
H+S I P+ V
Sbjct: 146 HDSKIKFPLPHRV 158
>BC066319-1|AAH66319.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 183 bits (446), Expect = 8e-46
Identities = 84/133 (63%), Positives = 97/133 (72%)
Frame = +1
Query: 181 P*YKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXNNFGIWLRYE 360
P Y+MRIF+P+ +VAKSRFWYF+ QLKK KK++G NFGIWLRY+
Sbjct: 26 PLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYD 85
Query: 361 SRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQXIXVEVIXAAACRRPQVKQF 540
SRSG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQ + VE I A+ CRRP VKQF
Sbjct: 86 SRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQF 145
Query: 541 HNSTIXIPIXQTV 579
H+S I P+ V
Sbjct: 146 HDSKIKFPLPHRV 158
>BC007512-1|AAH07512.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 183 bits (446), Expect = 8e-46
Identities = 84/133 (63%), Positives = 97/133 (72%)
Frame = +1
Query: 181 P*YKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXNNFGIWLRYE 360
P Y+MRIF+P+ +VAKSRFWYF+ QLKK KK++G NFGIWLRY+
Sbjct: 26 PLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYD 85
Query: 361 SRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQXIXVEVIXAAACRRPQVKQF 540
SRSG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQ + VE I A+ CRRP VKQF
Sbjct: 86 SRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQF 145
Query: 541 HNSTIXIPIXQTV 579
H+S I P+ V
Sbjct: 146 HDSKIKFPLPHRV 158
>AK222647-1|BAD96367.1| 176|Homo sapiens ribosomal protein L18a
variant protein.
Length = 176
Score = 183 bits (446), Expect = 8e-46
Identities = 84/133 (63%), Positives = 97/133 (72%)
Frame = +1
Query: 181 P*YKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXNNFGIWLRYE 360
P Y+MRIF+P+ +VAKSRFWYF+ QLKK KK++G NFGIWLRY+
Sbjct: 26 PLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYD 85
Query: 361 SRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQXIXVEVIXAAACRRPQVKQF 540
SRSG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQ + VE I A+ CRRP VKQF
Sbjct: 86 SRSGTHNMYREYRDLTAAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQF 145
Query: 541 HNSTIXIPIXQTV 579
H+S I P+ V
Sbjct: 146 HDSKIKFPLPHRV 158
>AC005796-1|AAC62828.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 183 bits (446), Expect = 8e-46
Identities = 84/133 (63%), Positives = 97/133 (72%)
Frame = +1
Query: 181 P*YKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXNNFGIWLRYE 360
P Y+MRIF+P+ +VAKSRFWYF+ QLKK KK++G NFGIWLRY+
Sbjct: 26 PLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYD 85
Query: 361 SRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQXIXVEVIXAAACRRPQVKQF 540
SRSG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQ + VE I A+ CRRP VKQF
Sbjct: 86 SRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQF 145
Query: 541 HNSTIXIPIXQTV 579
H+S I P+ V
Sbjct: 146 HDSKIKFPLPHRV 158
>AY779046-1|AAX47571.1| 136|Homo sapiens ribosomal protein
L18a-like protein protein.
Length = 136
Score = 151 bits (367), Expect = 3e-36
Identities = 70/110 (63%), Positives = 81/110 (73%)
Frame = +1
Query: 181 P*YKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXNNFGIWLRYE 360
P Y+MRIF+P+ +VAKSRFWYF+ QLKK KK++G NFGIWLR +
Sbjct: 26 PLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGETVYCGQVFEKSPLRVKNFGIWLRCD 85
Query: 361 SRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQXIXVEVIXAA 510
SRSG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQ + VE I A+
Sbjct: 86 SRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMMVEEIAAS 135
>X80822-1|CAA56788.1| 140|Homo sapiens protein ( H.sapiens mRNA for
ORF. ).
Length = 140
Score = 133 bits (321), Expect = 1e-30
Identities = 59/82 (71%), Positives = 65/82 (79%)
Frame = +1
Query: 334 NFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQXIXVEVIXAAA 513
NFGIWL Y+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQ + VE I +
Sbjct: 41 NFGIWLSYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAVSK 100
Query: 514 CRRPQVKQFHNSTIXIPIXQTV 579
CRRP VKQFH+S I P+ V
Sbjct: 101 CRRPAVKQFHDSKIKFPLPHRV 122
>AB007175-1|BAA28596.1| 66|Homo sapiens ribosomal protein L18a
protein.
Length = 66
Score = 69.3 bits (162), Expect = 2e-11
Identities = 32/48 (66%), Positives = 36/48 (75%)
Frame = +1
Query: 436 RDMGARHRARAHSIQXIXVEVIXAAACRRPQVKQFHNSTIXIPIXQTV 579
RDMGARHRARAHSIQ + VE I A+ CRRP VKQFH+S I P+ V
Sbjct: 1 RDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRV 48
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,594,351
Number of Sequences: 237096
Number of extensions: 1517100
Number of successful extensions: 6172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6164
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12991778748
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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