Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_L02
         (976 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X75339-1|CAA53089.1|  177|Drosophila melanogaster ribosomal prot...   198   7e-51
AY071222-1|AAL48844.1|  177|Drosophila melanogaster RE26382p pro...   198   7e-51
AE013599-2503|AAF57838.1|  177|Drosophila melanogaster CG6510-PA...   198   7e-51
BT023059-1|AAY55475.1|  328|Drosophila melanogaster IP10969p pro...    36   0.084

>X75339-1|CAA53089.1|  177|Drosophila melanogaster ribosomal protein
           L18a protein.
          Length = 177

 Score =  198 bits (484), Expect = 7e-51
 Identities = 95/136 (69%), Positives = 101/136 (74%)
 Frame = +1

Query: 172 PNLP*YKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXNNFGIWL 351
           P  P YKMRIF+PD IVAKSRFWYFLRQLKKFKKTTG                 NFGIWL
Sbjct: 23  PQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQVYETSPVKIKNFGIWL 82

Query: 352 RYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQXIXVEVIXAAACRRPQV 531
           RY+SRSG HNMYREYRDL+VGGAVTQCYRDMGARHRARAHSIQ I V+ I AA  RR  V
Sbjct: 83  RYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQIIKVDSIPAAKTRRVHV 142

Query: 532 KQFHNSTIXIPIXQTV 579
           KQFH+S I  P+ Q V
Sbjct: 143 KQFHDSKIKFPLVQRV 158



 Score = 38.7 bits (86), Expect = 0.012
 Identities = 21/44 (47%), Positives = 28/44 (63%)
 Frame = +2

Query: 107 RAKGQLREYEVIGRKLPIGERAQTSLDIK*EFSLRIQLSPNLVS 238
           RAKG L+EYEV+GRKLP  +  QT L     + +RI    N+V+
Sbjct: 2   RAKGLLKEYEVVGRKLPSEKEPQTPL-----YKMRIFAPDNIVA 40


>AY071222-1|AAL48844.1|  177|Drosophila melanogaster RE26382p
           protein.
          Length = 177

 Score =  198 bits (484), Expect = 7e-51
 Identities = 95/136 (69%), Positives = 101/136 (74%)
 Frame = +1

Query: 172 PNLP*YKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXNNFGIWL 351
           P  P YKMRIF+PD IVAKSRFWYFLRQLKKFKKTTG                 NFGIWL
Sbjct: 23  PQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQVYETSPVKIKNFGIWL 82

Query: 352 RYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQXIXVEVIXAAACRRPQV 531
           RY+SRSG HNMYREYRDL+VGGAVTQCYRDMGARHRARAHSIQ I V+ I AA  RR  V
Sbjct: 83  RYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQIIKVDSIPAAKTRRVHV 142

Query: 532 KQFHNSTIXIPIXQTV 579
           KQFH+S I  P+ Q V
Sbjct: 143 KQFHDSKIKFPLVQRV 158



 Score = 38.7 bits (86), Expect = 0.012
 Identities = 21/44 (47%), Positives = 28/44 (63%)
 Frame = +2

Query: 107 RAKGQLREYEVIGRKLPIGERAQTSLDIK*EFSLRIQLSPNLVS 238
           RAKG L+EYEV+GRKLP  +  QT L     + +RI    N+V+
Sbjct: 2   RAKGLLKEYEVVGRKLPSEKEPQTPL-----YKMRIFAPDNIVA 40


>AE013599-2503|AAF57838.1|  177|Drosophila melanogaster CG6510-PA
           protein.
          Length = 177

 Score =  198 bits (484), Expect = 7e-51
 Identities = 95/136 (69%), Positives = 101/136 (74%)
 Frame = +1

Query: 172 PNLP*YKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXNNFGIWL 351
           P  P YKMRIF+PD IVAKSRFWYFLRQLKKFKKTTG                 NFGIWL
Sbjct: 23  PQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQVYETSPVKIKNFGIWL 82

Query: 352 RYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQXIXVEVIXAAACRRPQV 531
           RY+SRSG HNMYREYRDL+VGGAVTQCYRDMGARHRARAHSIQ I V+ I AA  RR  V
Sbjct: 83  RYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQIIKVDSIPAAKTRRVHV 142

Query: 532 KQFHNSTIXIPIXQTV 579
           KQFH+S I  P+ Q V
Sbjct: 143 KQFHDSKIKFPLVQRV 158



 Score = 38.7 bits (86), Expect = 0.012
 Identities = 21/44 (47%), Positives = 28/44 (63%)
 Frame = +2

Query: 107 RAKGQLREYEVIGRKLPIGERAQTSLDIK*EFSLRIQLSPNLVS 238
           RAKG L+EYEV+GRKLP  +  QT L     + +RI    N+V+
Sbjct: 2   RAKGLLKEYEVVGRKLPSEKEPQTPL-----YKMRIFAPDNIVA 40


>BT023059-1|AAY55475.1|  328|Drosophila melanogaster IP10969p
           protein.
          Length = 328

 Score = 35.9 bits (79), Expect = 0.084
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = +2

Query: 107 RAKGQLREYEVIGRKLPI 160
           RAKG L+EYEV+GRKLPI
Sbjct: 2   RAKGLLKEYEVVGRKLPI 19


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,414,666
Number of Sequences: 53049
Number of extensions: 490102
Number of successful extensions: 1126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4894529517
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)