Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_L02
         (976 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal pro...   144   1e-34
U29097-10|AAA68414.1|  348|Caenorhabditis elegans Serpentine rec...    29   5.0  

>AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 20 protein.
          Length = 180

 Score =  144 bits (348), Expect = 1e-34
 Identities = 63/136 (46%), Positives = 87/136 (63%)
 Frame = +1

Query: 172 PNLP*YKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXNNFGIWL 351
           P  P +KM+IF+ + ++AKSRFWYF+  L++ KK  G                 N+G+WL
Sbjct: 26  PVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGEILSIKQVFEKNPGTVKNYGVWL 85

Query: 352 RYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQXIXVEVIXAAACRRPQV 531
           +Y+SR+G HNMYREYRD +V GAVTQCYRDMGARHRA+A  I  + V+ + A   +R  +
Sbjct: 86  KYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQADRIHILKVQTVKAEDTKRAGI 145

Query: 532 KQFHNSTIXIPIXQTV 579
           K FH++ I  P+   V
Sbjct: 146 KMFHDAKIRFPLPHRV 161


>U29097-10|AAA68414.1|  348|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 29 protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 120 CPLALHFWSFYLKDFVSRKP 61
           CP+A+ FW+F+  D+ S  P
Sbjct: 156 CPIAIQFWTFHDSDYTSYVP 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,553,743
Number of Sequences: 27780
Number of extensions: 238681
Number of successful extensions: 528
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2531861596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)