Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_L01
         (1282 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   0.063
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    24   0.069
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    30   0.60 
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      29   1.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.4  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   5.6  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   7.4  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   7.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   7.4  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   7.4  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 785 PPPPPPPP 762
           PPPPPPPP
Sbjct: 189 PPPPPPPP 196



 Score = 26.6 bits (56), Expect = 7.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 784 PPPPPPPP 761
           PPPPPPPP
Sbjct: 189 PPPPPPPP 196



 Score = 26.6 bits (56), Expect(2) = 0.063
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 785 PPPPPPPP 762
           PPPPPPPP
Sbjct: 190 PPPPPPPP 197



 Score = 26.6 bits (56), Expect = 7.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 784 PPPPPPPP 761
           PPPPPPPP
Sbjct: 190 PPPPPPPP 197



 Score = 25.4 bits (53), Expect(2) = 0.063
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 782 PPPPPPPXXXP 750
           PPPPPPP   P
Sbjct: 238 PPPPPPPTLPP 248


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 23.8 bits (49), Expect(3) = 0.069
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 785 PPPPPPP 765
           PPPPPPP
Sbjct: 311 PPPPPPP 317



 Score = 23.8 bits (49), Expect(3) = 0.069
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 782 PPPPPPP 762
           PPPPPPP
Sbjct: 337 PPPPPPP 343



 Score = 22.6 bits (46), Expect(3) = 0.069
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 779 PPPPPPXXXP 750
           PPPPPP   P
Sbjct: 361 PPPPPPRSAP 370


>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 30.3 bits (65), Expect = 0.60
 Identities = 23/73 (31%), Positives = 25/73 (34%)
 Frame = -3

Query: 641 KXXKXKXXXKKKKKKXPKXXKXKXXXPQKXPPXXXKKKKXXKKPKXKKKXKKXXXXXXXX 462
           K  K K    KKK K  K        P+K      KKKK  KK   +   KK        
Sbjct: 164 KREKRKKHSSKKKSKK-KTSTGSALDPKKLEKITKKKKKEHKKKDKESSSKKRKSGSSDK 222

Query: 461 XXKKKXXXXKKKK 423
             KKK     K K
Sbjct: 223 EEKKKKKIKLKDK 235


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
 Frame = +3

Query: 501 FXFWFFXXFFFFXXXG----GXFLGXXXFXFXXFWXFFFFFFXXXFXFXXF 641
           F +WFF  FFFF          F+         F+ FFF+F    F    F
Sbjct: 74  FFYWFFFFFFFFSHCRRFHIAIFIHPYDSNVVPFFCFFFYFSLFSFFSFLF 124


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 785 PPPPPPPPXXXP 750
           PPPPPPPP   P
Sbjct: 9   PPPPPPPPGFEP 20



 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 782 PPPPPPPXXXPXKKXK 735
           PPPPPPP     +K K
Sbjct: 24  PPPPPPPGYVKKRKNK 39


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 784 PPPPPPPPXXXXXKXKKK 731
           PPPPPPPP       K +
Sbjct: 370 PPPPPPPPELLNHSPKSR 387



 Score = 26.6 bits (56), Expect = 7.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 785 PPPPPPPP 762
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 785 PPPPPPPP 762
           PPPPPPPP
Sbjct: 306 PPPPPPPP 313



 Score = 26.6 bits (56), Expect = 7.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 784 PPPPPPPP 761
           PPPPPPPP
Sbjct: 306 PPPPPPPP 313



 Score = 26.6 bits (56), Expect = 7.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 785 PPPPPPPP 762
           PPPPPPPP
Sbjct: 307 PPPPPPPP 314



 Score = 26.6 bits (56), Expect = 7.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 784 PPPPPPPP 761
           PPPPPPPP
Sbjct: 307 PPPPPPPP 314


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 785  PPPPPPPP 762
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102



 Score = 26.6 bits (56), Expect = 7.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 784  PPPPPPPP 761
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 785 PPPPPPPP 762
           PPPPPPPP
Sbjct: 761 PPPPPPPP 768



 Score = 26.6 bits (56), Expect = 7.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 784 PPPPPPPP 761
           PPPPPPPP
Sbjct: 761 PPPPPPPP 768



 Score = 26.6 bits (56), Expect = 7.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 785 PPPPPPPP 762
           PPPPPPPP
Sbjct: 775 PPPPPPPP 782



 Score = 26.6 bits (56), Expect = 7.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 784 PPPPPPPP 761
           PPPPPPPP
Sbjct: 775 PPPPPPPP 782



 Score = 26.6 bits (56), Expect = 7.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 785 PPPPPPPP 762
           PPPPPPPP
Sbjct: 776 PPPPPPPP 783



 Score = 26.6 bits (56), Expect = 7.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 784 PPPPPPPP 761
           PPPPPPPP
Sbjct: 776 PPPPPPPP 783


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 785 PPPPPPPP 762
           PPPPPPPP
Sbjct: 945 PPPPPPPP 952



 Score = 26.6 bits (56), Expect = 7.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 784 PPPPPPPP 761
           PPPPPPPP
Sbjct: 945 PPPPPPPP 952



 Score = 26.6 bits (56), Expect = 7.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 785 PPPPPPPP 762
           PPPPPPPP
Sbjct: 946 PPPPPPPP 953



 Score = 26.6 bits (56), Expect = 7.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 784 PPPPPPPP 761
           PPPPPPPP
Sbjct: 946 PPPPPPPP 953


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,594,307
Number of Sequences: 5004
Number of extensions: 23799
Number of successful extensions: 396
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 697499478
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)