Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_K24
(891 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch... 212 7e-56
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.67
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 29 1.2
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 27 3.6
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 26 6.3
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 26 6.3
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 26 8.3
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |... 26 8.3
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch... 26 8.3
SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 26 8.3
>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 382
Score = 212 bits (517), Expect = 7e-56
Identities = 94/131 (71%), Positives = 115/131 (87%)
Frame = +2
Query: 197 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 376
FLFTSESVGEGHPDK+CDQISDAILDA L DP +KVACET +KTGMV++ GEIT+++ +
Sbjct: 5 FLFTSESVGEGHPDKICDQISDAILDACLKDDPFSKVACETASKTGMVMVFGEITTRSQI 64
Query: 377 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDEEVGAGDQGL 556
DYQKV+R T+K IGYDDS KGFDYKTC+V++A++QQSP+IA G+H + EE+GAGDQG+
Sbjct: 65 DYQKVIRNTIKSIGYDDSEKGFDYKTCNVLVAIEQQSPDIAQGLHYEKALEELGAGDQGI 124
Query: 557 MFGYATDETEE 589
MFGYATDET E
Sbjct: 125 MFGYATDETPE 135
Score = 64.9 bits (151), Expect = 1e-11
Identities = 33/77 (42%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Frame = +3
Query: 597 PLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRV---IL*SCHC 767
PLT++LAHKLN ++ RR+G W RPD+KTQVT EY GA +P+RV ++ + H
Sbjct: 138 PLTILLAHKLNAAMSVARRDGSLPWLRPDTKTQVTIEYEEENGAVIPRRVDTIVVSAQHA 197
Query: 768 NTLKXXPXDXRNEIXKR 818
+++ D R+EI ++
Sbjct: 198 DSIS--TEDLRSEILEK 212
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.5 bits (63), Expect = 0.67
Identities = 39/135 (28%), Positives = 61/135 (45%)
Frame = -1
Query: 585 SVSSVA*PNIKPWSPAPTSSSFLFSCTPAAMFGDCWSSASITLHVL*SKPLDESS*PICL 406
SVSS + +P TSSS+L S + + SS+S TL S L SS P
Sbjct: 188 SVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLT---SSSLSTSSIPSTS 244
Query: 405 TVSRTTF**STLALDVISPHKSTIPVLVMVSHATFASGS*FRCASRIASLIWSHILSG*P 226
+ S +T S + S S+ ++S ++ +S S +S I+S S S P
Sbjct: 245 SSSSSTS-SSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISS---SSSSSSSP 300
Query: 225 SPTDSDVNKNTDPSS 181
+ T S ++ ++ SS
Sbjct: 301 TSTSSTISSSSSSSS 315
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -2
Query: 746 DSLWDCCTTSKYIFASNLCF*IWSCPPK--FSISPELCNFL 630
DSL D TT ++IF+ NL +W P +I P+ N L
Sbjct: 246 DSLSDSMTTPEFIFSHNLVLQLWKYAPTTLLNIIPQFENEL 286
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 27.1 bits (57), Expect = 3.6
Identities = 20/69 (28%), Positives = 29/69 (42%)
Frame = +2
Query: 170 SYDMEDGSVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLC 349
S+D E S+F S+SV E CD+ SD L K E L+
Sbjct: 657 SFDSEADSLFEEASKSVPEDPVSVFCDEESDESLRLRAE-----KTLVENALSENFTLML 711
Query: 350 GEITSKANV 376
G+ TS+ ++
Sbjct: 712 GQSTSEESL 720
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 26.2 bits (55), Expect = 6.3
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 247 RPNKRRYSRRAPESGSGRKSCM 312
+P KR+Y+R+AP S R++ +
Sbjct: 1211 QPTKRKYNRKAPTKSSTRQTTL 1232
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 233 PDKMCDQISDAILDA-HLNQDPDAKVACETITKTGM 337
P K ++ D ++ + H N DPDAK+A ++K M
Sbjct: 180 PPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDM 215
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -3
Query: 469 EHHTACLVIKAFGRIIITNMFDRFAHNFLIIHVSFGCDFATQ 344
EH+ C+ + G ++++ DR + I +S C F T+
Sbjct: 101 EHNIPCITFNSSGTLLLSGSIDRSLQIWDITSLSCLCKFYTK 142
>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 266
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 365 KANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQ 484
+ N DY K+ E VK G D+ K C ++ L Q+
Sbjct: 106 EVNEDYAKIAYELVKLAGLDEIVTIMIGKACDSLVELQQK 145
>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
oxidase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -3
Query: 772 VLQ*HDYSMTLCGTVAPPANTYSQVTCVFESGLAHQNSPFRLSS 641
+LQ YS+ + G+++ + + TC S L HQ P + S
Sbjct: 106 ILQNLGYSLPIVGSISETSVSGIMSTCTHGSSLQHQVLPHYIKS 149
>SPBC1703.03c |||armadillo repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 664
Score = 25.8 bits (54), Expect = 8.3
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = +2
Query: 575 DETEECMXVDCSACTQTQSENCRAQAKWRILVGKTR--FKNTGYLRICICWWCNSPTESH 748
D T EC+ +C E+ A +W++ GK T +LR+ + W S +E
Sbjct: 446 DRTIECLNNISWSCNSVFVESSEAFTRWKLSAGKILQWIFQTIFLRLGLGVWPFS-SEGF 504
Query: 749 TVVVSL 766
T SL
Sbjct: 505 TTACSL 510
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,679,925
Number of Sequences: 5004
Number of extensions: 80456
Number of successful extensions: 246
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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