Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_K22
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|...    46   5e-06
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    28   2.0  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    27   3.4  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    27   4.5  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   6.0  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    26   7.9  

>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 340

 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 21/41 (51%), Positives = 28/41 (68%)
 Frame = +1

Query: 409 YIAGGSVQNSLRVAQWILKKPNICTYFGCVGNDEYAKLLKE 531
           Y AGG+ QNS R AQ++L  PN   + GCVG D++A +L E
Sbjct: 53  YSAGGAAQNSCRAAQYVL-PPNSTVFAGCVGQDKFADMLLE 92


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 387 YI*V*CRVYCWWKRSEFIKSSTMDSKET 470
           Y  V C++Y W   S+ +++ST+ SKET
Sbjct: 170 YFFVGCKIYDWVAGSKNLRASTIFSKET 197


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +3

Query: 402 CRVYCWWKRSEFIKSSTMDSKETKYLYLLWLC 497
           CRVYC+  R+  +K    D          W+C
Sbjct: 44  CRVYCYLSRNGLLKRPKEDDSSANAQVKNWVC 75


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 430 QNSLRVAQWILKKPNICTYFGCVGNDEYA 516
           +N+L    +I+KK  +  Y GC G + Y+
Sbjct: 187 RNALTPLDFIMKKNELMKYIGCFGVEAYS 215


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 584 FILYYLLDLVLTRCLSRVF 640
           F ++YL  +V+T C+S VF
Sbjct: 542 FFIFYLFTIVITFCMSAVF 560


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 412  IAGGSVQNSLRVAQWILKKPNICTYF-GCVGN 504
            + GG+V  S R+   ILK  +IC    GC+ N
Sbjct: 1067 VVGGNVLTSQRITDVILKAFSICAASQGCMNN 1098


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,250,534
Number of Sequences: 5004
Number of extensions: 64890
Number of successful extensions: 182
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)