Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_K21
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual   206   4e-54
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   4.8  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    26   6.3  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    26   8.3  
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb...    26   8.3  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    26   8.3  

>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score =  206 bits (502), Expect = 4e-54
 Identities = 91/127 (71%), Positives = 111/127 (87%)
 Frame = +3

Query: 294 KSNHTNNWAVLVDTSRFWFNYRHVANVLSIYRSVKRLGIPDSQIILMISDDMACNPRNPR 473
           +S+HTNNWAVL+ TSRFWFNYRH ANVL IYRSVKRLGIPDSQIILMI+DD ACN RN  
Sbjct: 20  ESSHTNNWAVLISTSRFWFNYRHTANVLGIYRSVKRLGIPDSQIILMIADDYACNSRNLF 79

Query: 474 PATIFNSAHEQINVYGDDVEVDYRGYEVSVENFIRLLTGRVPPDTPRSKQLLTDEGSNIL 653
           P T+F++A   +++YG+++E+DY+GYEV+VE FIRLLT RVP +TP SK+LLT+E SNIL
Sbjct: 80  PGTVFDNADRALDLYGEEIEIDYKGYEVTVEAFIRLLTERVPENTPASKRLLTNERSNIL 139

Query: 654 IYLTGHG 674
           IY+TGHG
Sbjct: 140 IYMTGHG 146



 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 27/45 (60%), Positives = 31/45 (68%)
 Frame = +2

Query: 755 QKKRYNEIFFIIDTCQASSMYEKFYSPXXLXTASSLVGEKSLXHH 889
           Q KRYNEI F++DTCQA+S+Y K YSP  L   SS VG  S  HH
Sbjct: 173 QHKRYNEILFMVDTCQANSLYTKIYSPNVLAIGSSEVGTSSYSHH 217



 Score = 39.9 bits (89), Expect = 5e-04
 Identities = 15/22 (68%), Positives = 22/22 (100%)
 Frame = +1

Query: 676 GDGFLKFQDSEEVTSQELADAL 741
           GDGF+KFQD+EE++S++LADA+
Sbjct: 147 GDGFIKFQDAEELSSEDLADAI 168


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 194 LSFFILLKISKLSVKHFQMFQILLLCFFLCYALSL 90
           LS   ++  S   + HF  F  L +C FL +  SL
Sbjct: 139 LSQIFIVYFSSFPILHFLFFFFLCVCVFLSFLFSL 173


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 110 KKNKAKEFETSENVSLITWIFLIK*KRKEE 199
           +  K +E  TSENVS++  + L K KR E+
Sbjct: 238 RMKKLEELWTSENVSMLDALLLNKAKRLEQ 267


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
 Frame = +3

Query: 369  NVLSIYRSVKRLGIPDSQIILMISD---DMACNPRNPRPATIFNSAHEQINVYGDDVEVD 539
            N+  + R+  ++ + +  + L + D   D A      +P    + + + I V+  ++E+ 
Sbjct: 1340 NMAKVIRACDQMHLWNEAVFLYVHDQSYDNAAAVMMEQPEAFDHQSFKDIIVHVANLELY 1399

Query: 540  YRGYEVSVENFIRLLTGRVPPDTPR 614
            YR     +E    LLT  +   TPR
Sbjct: 1400 YRALNFYLEQHPMLLTDLLAALTPR 1424


>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 415

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/68 (20%), Positives = 33/68 (48%)
 Frame = +3

Query: 369 NVLSIYRSVKRLGIPDSQIILMISDDMACNPRNPRPATIFNSAHEQINVYGDDVEVDYRG 548
           N++  + S+K + +   Q++ + +  +AC      P +I+N AH    ++  D  +    
Sbjct: 222 NLIDRFLSIKVVSLQKVQLVGLSALLIACKYEEIHPPSIYNFAHVVQGIFTVDEIIRAER 281

Query: 549 YEVSVENF 572
           Y + + +F
Sbjct: 282 YMLMLLDF 289


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 201 SSSFLFYFIKNIQVISETFSDVSNSFALFFFMLCFII 91
           S SFL  + + I  I E F ++  +FAL+ F  C +I
Sbjct: 52  SVSFLSVYNEKIGSIFEPFREIYEAFALYCF-FCLLI 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,250,223
Number of Sequences: 5004
Number of extensions: 61958
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)