Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_K21
         (894 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   1.2  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               23   3.8  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 234 IFNLLYLSLSSGIEIPEEFQKSNHTNNWAVLVDTSRFW 347
           IFNL+ +S+   I + +  + + H NN  V +     W
Sbjct: 274 IFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTILLVW 311


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 538 IIEVMRCQLKILSVC*LAEYHLTHLAPSN 624
           +I ++RC    LSV  +  Y +T + P N
Sbjct: 1   MISMLRCIYLFLSVILITSYFVTPVMPCN 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,000
Number of Sequences: 438
Number of extensions: 4390
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)