Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_K17
(937 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 0.90
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 0.90
Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical pr... 31 1.6
Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical pr... 31 1.6
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 4.8
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 4.8
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 4.8
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.5 bits (68), Expect = 0.90
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +1
Query: 850 PXPPXXXVFPXPGXGXXPPQXGXWXPPPP 936
P PP + P P PP G W PPPP
Sbjct: 276 PMPPTPGMTPRP---PPPPSSGMWPPPPP 301
Score = 29.9 bits (64), Expect = 2.7
Identities = 28/96 (29%), Positives = 30/96 (31%)
Frame = +1
Query: 649 PPPPXXTFKKSGPXXQGGETPXGXXKNPRXXPP*XPPXWXXXXXXXXXXXXXXXXLFSPL 828
PPPP P G TP G P PP PP + P
Sbjct: 288 PPPPSSGMWPPPPPPPPGRTP-GPPGMPGMPPP-PPPSRFGPPGMGGMPPPPPPGMRYP- 344
Query: 829 GKGGALFPXPPXXXVFPXPGXGXXPPQXGXWXPPPP 936
GG P PP +P G G PP P PP
Sbjct: 345 --GGMPPPPPPR---YPSAGPGMYPPPPPSRPPAPP 375
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.5 bits (68), Expect = 0.90
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +1
Query: 850 PXPPXXXVFPXPGXGXXPPQXGXWXPPPP 936
P PP + P P PP G W PPPP
Sbjct: 286 PMPPTPGMTPRP---PPPPSSGMWPPPPP 311
Score = 29.9 bits (64), Expect = 2.7
Identities = 28/96 (29%), Positives = 30/96 (31%)
Frame = +1
Query: 649 PPPPXXTFKKSGPXXQGGETPXGXXKNPRXXPP*XPPXWXXXXXXXXXXXXXXXXLFSPL 828
PPPP P G TP G P PP PP + P
Sbjct: 298 PPPPSSGMWPPPPPPPPGRTP-GPPGMPGMPPP-PPPSRFGPPGMGGMPPPPPPGMRYP- 354
Query: 829 GKGGALFPXPPXXXVFPXPGXGXXPPQXGXWXPPPP 936
GG P PP +P G G PP P PP
Sbjct: 355 --GGMPPPPPPR---YPSAGPGMYPPPPPSRPPAPP 385
>Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.3 protein.
Length = 283
Score = 30.7 bits (66), Expect = 1.6
Identities = 29/112 (25%), Positives = 36/112 (32%)
Frame = +1
Query: 424 PPGXXGLVFGXXSXSPPXXPLAPGLRVGXXVXXPPXGGXRFXPKXGXXPXKXXXXXGPXX 603
P G G V G PP P PG + P GG R P P + GP
Sbjct: 140 PAGPPGAVGGPGPKGPPGPPGGPG-----ELGGPGRGGNRGPPGPRGPPGE----AGP-D 189
Query: 604 XQNXKKXRLXGFXXXPPPPXXTFKKSGPXXQGGETPXGXXKNPRXXPP*XPP 759
+ + + P PP + P G P G +P P PP
Sbjct: 190 GEGGRPGQAGQTRSAPSPPGQPGQPGEPGSPGEPGPDGRAGHPGRNGPPGPP 241
>Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.2 protein.
Length = 283
Score = 30.7 bits (66), Expect = 1.6
Identities = 29/112 (25%), Positives = 36/112 (32%)
Frame = +1
Query: 424 PPGXXGLVFGXXSXSPPXXPLAPGLRVGXXVXXPPXGGXRFXPKXGXXPXKXXXXXGPXX 603
P G G V G PP P PG + P GG R P P + GP
Sbjct: 140 PAGPPGAVGGPGPKGPPGPPGGPG-----ELGGPGRGGNRGPPGPRGPPGE----AGP-D 189
Query: 604 XQNXKKXRLXGFXXXPPPPXXTFKKSGPXXQGGETPXGXXKNPRXXPP*XPP 759
+ + + P PP + P G P G +P P PP
Sbjct: 190 GEGGRPGQAGQTRSAPSPPGQPGQPGEPGSPGEPGPDGRAGHPGRNGPPGPP 241
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +1
Query: 820 SPLGKGGALFPXPPXXXVFPXPGXGXXPPQXGXWXPPPP 936
SP A P PP P P G PP PPPP
Sbjct: 254 SPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 292
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +1
Query: 850 PXPPXXXVFPXPGXGXXPPQXGXWXPPPP 936
P PP P P G PP PPPP
Sbjct: 273 PPPPTGSPPPPPAGGSPPPPRAGSPPPPP 301
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +1
Query: 850 PXPPXXXVFPXPGXGXXPPQXGXWXPPPP 936
P PP P G G PP PPPP
Sbjct: 239 PPPPPKGSPPLAGSGSPPPPPAAGSPPPP 267
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +1
Query: 820 SPLGKGGALFPXPPXXXVFPXPGXGXXPPQXGXWXPPPP 936
SP G P PP P P G PP PPPP
Sbjct: 246 SPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 284
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +1
Query: 820 SPLGKGGALFPXPPXXXVFPXPGXGXXPPQXGXWXPPPP 936
SP A P PP P P G PP PPPP
Sbjct: 275 SPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 313
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +1
Query: 850 PXPPXXXVFPXPGXGXXPPQXGXWXPPPP 936
P PP P P G PP PPPP
Sbjct: 294 PPPPTGSPPPPPAGGSPPPPRAGSPPPPP 322
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +1
Query: 850 PXPPXXXVFPXPGXGXXPPQXGXWXPPPP 936
P PP P G G PP PPPP
Sbjct: 260 PPPPPKGSPPLAGSGSPPPPPAAGSPPPP 288
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +1
Query: 820 SPLGKGGALFPXPPXXXVFPXPGXGXXPPQXGXWXPPPP 936
SP G P PP P P G PP PPPP
Sbjct: 267 SPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 305
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +1
Query: 820 SPLGKGGALFPXPPXXXVFPXPGXGXXPPQXGXWXPPPP 936
SP A P PP P P G PP PPPP
Sbjct: 260 SPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 298
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +1
Query: 850 PXPPXXXVFPXPGXGXXPPQXGXWXPPPP 936
P PP P P G PP PPPP
Sbjct: 279 PPPPTGSPPPPPAGGSPPPPRAGSPPPPP 307
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +1
Query: 850 PXPPXXXVFPXPGXGXXPPQXGXWXPPPP 936
P PP P G G PP PPPP
Sbjct: 245 PPPPPKGSPPLAGSGSPPPPPAAGSPPPP 273
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +1
Query: 820 SPLGKGGALFPXPPXXXVFPXPGXGXXPPQXGXWXPPPP 936
SP G P PP P P G PP PPPP
Sbjct: 252 SPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 290
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,965,192
Number of Sequences: 27780
Number of extensions: 191171
Number of successful extensions: 761
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2412704140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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