Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_K16
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    42   9e-05
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    38   0.001
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    38   0.002
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    31   0.17 
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    27   4.8  
SPBC21B10.12 |rec6||meiotic recombination protein Rec6|Schizosac...    26   8.3  

>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 42.3 bits (95), Expect = 9e-05
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = +3

Query: 465 VESANIKNSGLFK-PNPYLQVIIDDKILRKTEVIRNTLHPKWKEDLTILVTPQSQLLFRL 641
           V +  +    LF+ P+P+  + +D +    T+VI+ +++P W E   + V P S +  RL
Sbjct: 13  VAADGLSKRDLFRQPDPFAILTVDGEQTHTTKVIKKSVNPYWNEGFEVTVKPSSVISIRL 72

Query: 642 ADYHSFRER 668
            D   F+++
Sbjct: 73  FDQKKFKKK 81


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +3

Query: 504 PNPYLQVIIDDKILRKTEVIRNTLHPKWKEDLTILVTPQSQLLFRLADYHSFRER 668
           P+P+  + +D +    T  I+ TL+P W E   + VT  S +  ++ D   F+++
Sbjct: 29  PDPFAVLTVDGEQTHTTTAIKKTLNPYWNETFEVNVTDNSTIAIQVFDQKKFKKK 83


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 21/55 (38%), Positives = 27/55 (49%)
 Frame = +3

Query: 483 KNSGLFKPNPYLQVIIDDKILRKTEVIRNTLHPKWKEDLTILVTPQSQLLFRLAD 647
           KN  L    PYL + +DD    KT V   TL   W     + V+PQS +L +L D
Sbjct: 20  KNGLLRSLKPYLLISVDDDQFIKTNVASGTLRLSWGFTQKLTVSPQSIILLQLFD 74


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +3

Query: 501 KPNPYLQVIIDDKILRKTEVIRNTLHPKWKEDLTILVTPQSQLL 632
           K +PY +VI+ + ++ +T    N L+P W E L + +   ++ +
Sbjct: 778 KSDPYARVIVGNSVVARTVYTPNNLNPIWNEILYVPIMADTKTI 821



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/48 (22%), Positives = 27/48 (56%)
 Frame = +3

Query: 468  ESANIKNSGLFKPNPYLQVIIDDKILRKTEVIRNTLHPKWKEDLTILV 611
            +  N+    +   +P++ + ++ +   K++VI+  L+P W E+  I+V
Sbjct: 1086 DGQNLPIGDIRSSDPFVVLKLNGESAFKSKVIKKNLNPVWNEEADIVV 1133


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = -2

Query: 844 LKPSRSNTSSAVFTXSISTSILLRKMFSFNLM*VLNSHIS 725
           +KP  +N+ S VFT     ++LLR+  S N   ++N+++S
Sbjct: 152 MKPVSTNSKSDVFTLYTDETVLLRRCASDNKP-LINNNLS 190


>SPBC21B10.12 |rec6||meiotic recombination protein
           Rec6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -2

Query: 268 SYYRILITVKENVNNATFSLSHYLLKSSAEGT*IHVHENLNVYKKILVFF 119
           SYY  +     N N    S+S  L + S + +    H  L +YKK  + +
Sbjct: 35  SYYSKMFNAMSNANIIAGSISRILTRESLDKSFEQSHFQLLMYKKCKLIY 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,403,104
Number of Sequences: 5004
Number of extensions: 68987
Number of successful extensions: 147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)