Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_K14
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...    86   7e-18
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    29   0.63 
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    29   0.83 

>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 85.8 bits (203), Expect = 7e-18
 Identities = 40/91 (43%), Positives = 51/91 (56%)
 Frame = +3

Query: 561 YKYNMEPTESNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDLXXXXXXXXXXXXXXXXY 740
           Y  +  P   N+R +C +  +K  D E WFGIEQEY +LD                   +
Sbjct: 103 YTADGSPNGFNHRDACAKLLEKHADKETWFGIEQEYTMLDYYDRPFGWPKGGFPGPQGPF 162

Query: 741 YCGVGANKVFARDFVEAHYRCCLYAGVPIAG 833
           YCGVG  +VFARD VEAHY+ CLYAG+ I+G
Sbjct: 163 YCGVGTGRVFARDIVEAHYKACLYAGINISG 193



 Score = 75.4 bits (177), Expect = 1e-14
 Identities = 40/74 (54%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
 Frame = +1

Query: 274 VLSKT-LLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGS 450
           +LSK  +L++Y DLP    K++A YIWIDG   HLR K  TL+  P +   L +WNFDGS
Sbjct: 9   LLSKAAILNKYADLPQNG-KVMAEYIWIDGFN-HLRSKTMTLDAKPSSIDQLRVWNFDGS 66

Query: 451 STNQADGHNSDTYL 492
           ST QA G+NSDT L
Sbjct: 67  STGQAPGNNSDTLL 80



 Score = 29.5 bits (63), Expect = 0.63
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +2

Query: 434 GTSMAAQPTKLMGTILIPTSXPRAIYKDPFRRGNHIL 544
           G+S    P     T+L P     A+Y DPFRRG++IL
Sbjct: 65  GSSTGQAPGNNSDTLLKPV----AMYNDPFRRGDNIL 97


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
 Frame = +1

Query: 307 DLPLPADKILATYIWIDGSGEHLR--CKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNS 480
           D+ L   K+L   + +  + E++R   KD + N +    K + I  F GS TN  D   S
Sbjct: 373 DVLLQIPKVLENLLPLMSNDENMRQSAKDLSQNLVILVSKIMDI-EFSGSETNNKDNSLS 431

Query: 481 DTYLXTSCYLQGSIPSRKSHPRLCVI 558
             +      LQ  + +     RLC +
Sbjct: 432 VDFRSLIEVLQKLLSNDNEETRLCAL 457


>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 396 QGAIFAPQVFARAVDPNVGGENLVSRQWKIIVSTQ 292
           Q  IF     AR    +VGG +  SR WKI+  +Q
Sbjct: 292 QDVIFGVDALARERCVSVGGRDRTSRLWKIVEESQ 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,512,161
Number of Sequences: 5004
Number of extensions: 75009
Number of successful extensions: 213
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)