Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_K14
(850 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0661 - 30693701-30693853,30694037-30694196,30694290-306943... 85 5e-17
03_05_0899 - 28619081-28619208,28619309-28619369,28619936-286200... 84 1e-16
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591... 81 8e-16
03_02_0210 - 6425708-6425863,6425955-6426114,6426204-6426295,642... 77 1e-14
06_03_0481 - 21304802-21304920,21305063-21305131,21306140-21306557 29 6.2
11_06_0048 - 19614636-19616076,19618621-19618992,19619057-19619451 28 8.2
09_06_0151 - 21237677-21237704,21237759-21237829,21238101-212382... 28 8.2
>02_05_0661 -
30693701-30693853,30694037-30694196,30694290-30694381,
30694469-30694543,30694671-30694799,30694916-30695003,
30695118-30695224,30695645-30695693,30695802-30695905,
30696108-30696147,30696838-30696911
Length = 356
Score = 85.4 bits (202), Expect = 5e-17
Identities = 40/98 (40%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Frame = +3
Query: 549 MCDTYKYNMEPTESNNRISCQEAYD--KCKDDEPWFGIEQEYILLDSDLXXXXXXXXXXX 722
MCD Y EP +N R + + + + +EPW+GIEQEY LL D+
Sbjct: 91 MCDCYTPAGEPIPTNKRHNAAKIFSSPEVASEEPWYGIEQEYTLLQKDINWPLGWPVGGF 150
Query: 723 XXXXX-YYCGVGANKVFARDFVEAHYRCCLYAGVPIAG 833
YYCG+GA+K F RD V++HY+ CLYAG+ I+G
Sbjct: 151 PGPQGPYYCGIGADKSFGRDIVDSHYKACLYAGINISG 188
Score = 65.3 bits (152), Expect = 6e-11
Identities = 31/56 (55%), Positives = 37/56 (66%)
Frame = +1
Query: 325 DKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYL 492
+KI+A YIWI GSG LR K RTL+ P LP WN+DGSST QA G +S+ L
Sbjct: 17 EKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYDGSSTGQAPGEDSEVIL 72
Score = 35.9 bits (79), Expect = 0.041
Identities = 21/45 (46%), Positives = 27/45 (60%)
Frame = +2
Query: 410 KLPKICLYGTSMAAQPTKLMGTILIPTSXPRAIYKDPFRRGNHIL 544
KLPK G+S P + IL P +AI+KDPFR+GN+IL
Sbjct: 49 KLPKWNYDGSSTGQAPGEDSEVILYP----QAIFKDPFRKGNNIL 89
>03_05_0899 -
28619081-28619208,28619309-28619369,28619936-28620095,
28620200-28620237,28620341-28620394,28620562-28620636,
28620744-28620872,28621172-28621259,28621340-28621446,
28621547-28621595,28621683-28621786,28622019-28622133,
28622517-28622596
Length = 395
Score = 84.2 bits (199), Expect = 1e-16
Identities = 40/98 (40%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Frame = +3
Query: 549 MCDTYKYNMEPTESNNRISCQEAYDK--CKDDEPWFGIEQEYILLDSDLXXXXXXXXXXX 722
MCD Y N EP +NNR + + K +EPW+GIEQEY LL +
Sbjct: 118 MCDCYAPNGEPIPTNNRYNAARIFSHPDVKAEEPWYGIEQEYTLLQKHINWPLGWPLGGY 177
Query: 723 XXXXX-YYCGVGANKVFARDFVEAHYRCCLYAGVPIAG 833
YYC GA+K + RD V+AHY+ CL+AG+ I+G
Sbjct: 178 PGPQGPYYCAAGADKSYGRDIVDAHYKACLFAGINISG 215
Score = 41.5 bits (93), Expect = 8e-04
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +1
Query: 370 HLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYL 492
HL+ + TL+ P LP WNFDGSST QA G +S+ L
Sbjct: 59 HLKEVNHTLSGPVDDPSKLPKWNFDGSSTGQATGDDSEVIL 99
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +2
Query: 410 KLPKICLYGTSMAAQPTKLMGTILIPTSXPRAIYKDPFRRGNHIL 544
KLPK G+S Q T +++ P+AI++DPFR+G +IL
Sbjct: 76 KLPKWNFDGSS-TGQATGDDSEVIL---HPQAIFRDPFRKGKNIL 116
>04_04_1445 - 33658355-33658417,33658536-33658669,33659056-33659116,
33659197-33659356,33660032-33660081,33662237-33662290,
33662630-33662704,33662821-33662949,33663065-33663152,
33663266-33663372,33663513-33663561,33663657-33663760,
33663941-33663980,33664409-33664659,33664674-33664686,
33665846-33666355,33666437-33667657,33667973-33668221,
33668305-33668531
Length = 1194
Score = 81.4 bits (192), Expect = 8e-16
Identities = 41/98 (41%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Frame = +3
Query: 549 MCDTYKYNMEPTESNNRISCQEAYD--KCKDDEPWFGIEQEYILLDSDLXXXXXXXXXXX 722
MCDTY EP +N R + + K PWFGIEQEY LL D+
Sbjct: 890 MCDTYTPAGEPIPTNKRNRAAQVFSDPKVVSQVPWFGIEQEYTLLQRDVNWPLGWPVGGY 949
Query: 723 XXXXX-YYCGVGANKVFARDFVEAHYRCCLYAGVPIAG 833
YYC VG++K F RD +AHY+ CLYAG+ I+G
Sbjct: 950 PGPQGPYYCAVGSDKSFGRDISDAHYKACLYAGINISG 987
Score = 66.9 bits (156), Expect = 2e-11
Identities = 29/56 (51%), Positives = 39/56 (69%)
Frame = +1
Query: 325 DKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYL 492
DKI+A YIW+ G+G LR K RT++ + P +LP WN+DGSST QA G +S+ L
Sbjct: 816 DKIIAEYIWVGGTGIDLRSKSRTISKPVEDPSELPKWNYDGSSTGQAPGEDSEVIL 871
Score = 32.7 bits (71), Expect = 0.38
Identities = 20/45 (44%), Positives = 26/45 (57%)
Frame = +2
Query: 410 KLPKICLYGTSMAAQPTKLMGTILIPTSXPRAIYKDPFRRGNHIL 544
+LPK G+S P + IL P +AI+KDPFR GN+IL
Sbjct: 848 ELPKWNYDGSSTGQAPGEDSEVILYP----QAIFKDPFRGGNNIL 888
>03_02_0210 -
6425708-6425863,6425955-6426114,6426204-6426295,
6426490-6426564,6426701-6426829,6427312-6427375,
6427761-6427867,6428795-6428843,6428955-6429058,
6429166-6429205,6429492-6429565
Length = 349
Score = 77.4 bits (182), Expect = 1e-14
Identities = 39/97 (40%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Frame = +3
Query: 549 MCDTYKYNMEPTESNNRISCQEAYDK--CKDDEPWFGIEQEYILLDSDLXXXXXXXXXXX 722
MCD Y EP +N R S + + + PW+GIEQEY LL D+
Sbjct: 91 MCDCYTPQGEPIPTNKRHSAAKIFSHPDVVAEVPWYGIEQEYTLLQKDVNWPLGWPGP-- 148
Query: 723 XXXXXYYCGVGANKVFARDFVEAHYRCCLYAGVPIAG 833
YYC GA K F RD V+AHY+ C+YAG+ I+G
Sbjct: 149 -----YYCAAGAEKAFGRDIVDAHYKACIYAGINISG 180
Score = 61.3 bits (142), Expect = 9e-10
Identities = 29/57 (50%), Positives = 36/57 (63%)
Frame = +1
Query: 322 ADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYL 492
+DKI+A YIW+ GSG LR K RT+ LP WN+DGSST QA G +S+ L
Sbjct: 16 SDKIIAEYIWVGGSGIDLRSKARTVKGPITDVSQLPKWNYDGSSTGQAPGEDSEVIL 72
Score = 33.5 bits (73), Expect = 0.22
Identities = 20/45 (44%), Positives = 27/45 (60%)
Frame = +2
Query: 410 KLPKICLYGTSMAAQPTKLMGTILIPTSXPRAIYKDPFRRGNHIL 544
+LPK G+S P + IL P +AI+KDPFRRG++IL
Sbjct: 49 QLPKWNYDGSSTGQAPGEDSEVILYP----QAIFKDPFRRGDNIL 89
>06_03_0481 - 21304802-21304920,21305063-21305131,21306140-21306557
Length = 201
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 703 GPRVVSPHRKGHTTAVSVPTKSLPETLSKPTIDAVF 810
GP++ + HR H A S P P T++ T+ F
Sbjct: 159 GPKIRTAHRTVHRLAFSAPLTLFPHTVTTTTLHFFF 194
>11_06_0048 - 19614636-19616076,19618621-19618992,19619057-19619451
Length = 735
Score = 28.3 bits (60), Expect = 8.2
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Frame = -1
Query: 328 CQPAVEDHCIDSVAFWTALRXGELVKTG----PDRIFGLSSILGMRCISHFETGKARLCL 161
CQ +HC D +W LR L +T P I L S L + CI+ E
Sbjct: 411 CQKVDNNHCKDICLYWLHLRYLNLSRTSVTEIPREIENLQS-LQVLCINGIEIEDLPSTF 469
Query: 160 EMFPRSRVLNIARK-RIYERFCRSVKCFDRLTGR 62
+ LN+ K RI + F S+K L GR
Sbjct: 470 VRLGQILYLNVYLKTRIPDGF-GSLKYLQELKGR 502
>09_06_0151 -
21237677-21237704,21237759-21237829,21238101-21238281,
21238369-21238441,21239033-21239072,21239818-21239890,
21240075-21240151,21241033-21241138,21241256-21241278,
21241369-21241440
Length = 247
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 440 SMAAQPTKLMGTILIPTSXPRAIYKD 517
S A+ PT + I IP S P A+Y+D
Sbjct: 174 SYASYPTNQVSRISIPNSAPSAVYED 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,551,468
Number of Sequences: 37544
Number of extensions: 523175
Number of successful extensions: 1414
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1407
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -