Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_K13
         (872 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39648-9|AAM15605.1|  186|Caenorhabditis elegans Hypothetical pr...    50   2e-06
AC024793-1|AAF60692.2|  649|Caenorhabditis elegans Atm (ataxia t...    29   5.7  

>U39648-9|AAM15605.1|  186|Caenorhabditis elegans Hypothetical
           protein T13C5.6 protein.
          Length = 186

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
 Frame = +1

Query: 520 FVRRRRPVPM-NKLMEVGPDKFSFPSGHASRAVLISFILIYFDSVSIIFYPPLMAWVVSV 696
           +  R RP+   +KL+E   D +SFPSGH+SRA ++  ++ Y  + + ++  P + + + V
Sbjct: 85  YFHRERPIKTYSKLLEHTVDIYSFPSGHSSRAAML-LVMAY--NAAPLYVIPFIPFPLVV 141

Query: 697 SISRVLAERHYLLDSXXXXXXXXLEGLFMSLI 792
            +SRV   RHY+ D         LE   M  I
Sbjct: 142 GLSRVALGRHYITDVLAGIFIGYLEARLMLTI 173


>AC024793-1|AAF60692.2|  649|Caenorhabditis elegans Atm (ataxia
           telangectasia mutated)family protein 1 protein.
          Length = 649

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 370 IENGSVKTLEQLFLVLCQQMSS*FEHHTAKFFST 269
           ++  S +T  Q+F+ +CQQ S  F H     FST
Sbjct: 430 VQTESTETRRQVFVEICQQYSPVFRHFFYTNFST 463


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,736,776
Number of Sequences: 27780
Number of extensions: 415479
Number of successful extensions: 846
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)