Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_K12
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    29   0.65 
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    29   1.1  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    26   6.1  
SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces po...    26   6.1  
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb...    26   6.1  
SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr 1|||...    26   6.1  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    26   8.0  

>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
 Frame = +1

Query: 565 IRTYVHYSQCHGYRCA---VLNHIGA--LHSV-PVTGNR-IFSYGHTDDFNYMIENLMER 723
           +R       CHG  C    + N+IG   +  V PV   R  FS G+ D  +  I   +ER
Sbjct: 188 VRIQEFVESCHGQYCTFQQIYNNIGKPWVRKVRPVAIFRGTFSIGNRDSKDTSISIQVER 247

Query: 724 YPNTKL 741
           YP T+L
Sbjct: 248 YPRTRL 253


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 388 HSLIGRVRCPWPIGGRISLV-LPDKSTLT-YDLYE 486
           HS    ++CPW  G    +V +P KSTL+ Y  YE
Sbjct: 116 HSFEVPIKCPWAAGSAAFMVKVPFKSTLSDYSKYE 150


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 579 YISAYVHALRCVADAGTDSHSDVIFMFRSHWFIQIICECRLV 454
           +I  + + +R  +   +DSH D++F    H F Q  CE  L+
Sbjct: 680 FIEIHQNGIRYQSPLRSDSHIDLLFSNMKHLFFQ-PCEGELI 720


>SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 418

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
 Frame = +1

Query: 475 DLYEPVGSEHEDDVTVAICPGIGNTSESVYIRTYVHYSQCH--GYRCAVLNHIGALHSVP 648
           +L  PV SE       AIC  +G   +   I T++   +CH    R AV   +  +  V 
Sbjct: 74  ELTSPVASEQSRQDCEAICK-LGLKCK---ILTHI---RCHMDDARVAVETGVDGVDVVI 126

Query: 649 VTGNRIFSYGHTDDFNYMIENLME--RYPNTKLILVGFS 759
            T   +  Y H  D  Y+I++  E   +  +K I V FS
Sbjct: 127 GTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGIEVRFS 165


>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 247

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 490 VGSEHEDDVTVAICPGIGNTSESVYIR 570
           +GSE  D ++VA+ PG+ +T   V IR
Sbjct: 164 LGSEEPDIMSVAVRPGVVDTPMQVSIR 190


>SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 40  RFXVTXVCTXEASGCVSIPLFQRXDFPDIM*IFLLTVSHYILI-YCLI 180
           RF ++       SG V+   FQ+ DF  I  +F+   SH+I    CL+
Sbjct: 40  RFVISPHAGYMYSGKVASQGFQQLDFSKIQRVFVFGPSHHIFTRKCLV 87


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +1

Query: 292 FIENILFVSPFLNEAYFPT 348
           F EN ++V+P++++  FPT
Sbjct: 544 FAENNIYVTPYMDDQIFPT 562


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,669,373
Number of Sequences: 5004
Number of extensions: 80683
Number of successful extensions: 209
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)