Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_K12
(870 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0135 - 26165263-26165284,26165400-26165458,26165506-261657... 64 2e-10
09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335... 58 9e-09
05_04_0413 - 21063868-21064344,21064416-21064482,21064865-210649... 57 2e-08
01_06_1494 + 37756872-37757137,37757318-37757407,37758392-377584... 45 9e-05
03_05_0710 + 27038709-27038865,27039205-27039346,27039383-270395... 31 1.2
03_06_0502 - 34384285-34384503,34384595-34384755,34384854-343849... 29 3.7
12_01_0198 - 1461305-1463812 29 4.8
12_02_0305 - 17235832-17236379,17237345-17237444 29 6.4
11_04_0441 + 17781533-17781775,17782007-17782114,17782386-177824... 28 8.5
05_01_0385 - 3009557-3010497,3010749-3010782,3012311-3012609,301... 28 8.5
>02_05_0135 -
26165263-26165284,26165400-26165458,26165506-26165721,
26166309-26166362,26167029-26167123,26167220-26167317,
26167413-26167555,26167900-26168031,26168695-26168823,
26169370-26169831
Length = 469
Score = 63.7 bits (148), Expect = 2e-10
Identities = 30/97 (30%), Positives = 54/97 (55%)
Frame = +1
Query: 508 DDVTVAICPGIGNTSESVYIRTYVHYSQCHGYRCAVLNHIGALHSVPVTGNRIFSYGHTD 687
D + + PG+ S+ Y+R + ++ G+R V N G S PVT + +S T
Sbjct: 147 DAPVLILLPGLTGGSDDTYVRHMLLRARNKGWRVVVFNSRGCAGS-PVTTAKFYSASFTG 205
Query: 688 DFNYMIENLMERYPNTKLILVGFSLGGNLITKYLGXE 798
D ++++++ R+P + + VG+SLG N++ +YLG E
Sbjct: 206 DLRQVVDHVLGRFPQSNVYAVGWSLGANILVRYLGEE 242
>09_04_0247 +
16030543-16031324,16032812-16033088,16033374-16033559,
16033714-16033866,16034277-16034702,16035922-16037668,
16037687-16038183,16038519-16038709,16038786-16038941,
16040077-16040311,16040416-16040723,16041279-16041439,
16041852-16041895,16041975-16042067
Length = 1751
Score = 58.0 bits (134), Expect = 9e-09
Identities = 46/129 (35%), Positives = 62/129 (48%)
Frame = +1
Query: 403 RVRCPWPIGGRISLVLPDKSTLTYDLYEPVGSEHEDDVTVAICPGIGNTSESVYIRTYVH 582
RV P GG I+L PD L G EH D TV I PG S I+ +V
Sbjct: 184 RVCIPAEDGGVIALDWPDNLDL--------GKEHGLDSTVFIVPGTPEGSMERGIKVFVL 235
Query: 583 YSQCHGYRCAVLNHIGALHSVPVTGNRIFSYGHTDDFNYMIENLMERYPNTKLILVGFSL 762
+ +GY V+N G S P+T R+F+ +DD I + + P T L+ VG+
Sbjct: 236 DALKNGYFPIVMNPRGCGGS-PLTTPRLFTAADSDDIGTAIRFINNKRPWTTLMGVGWGY 294
Query: 763 GGNLITKYL 789
G N++TKYL
Sbjct: 295 GANMLTKYL 303
>05_04_0413 -
21063868-21064344,21064416-21064482,21064865-21064948,
21065028-21065158,21065504-21065560,21065818-21065866,
21067357-21067442,21067715-21067792,21067952-21068074,
21068705-21068794,21068796-21068849,21068923-21069020,
21069093-21069160,21069688-21069777,21069870-21070117
Length = 599
Score = 57.2 bits (132), Expect = 2e-08
Identities = 27/79 (34%), Positives = 43/79 (54%)
Frame = +1
Query: 562 YIRTYVHYSQCHGYRCAVLNHIGALHSVPVTGNRIFSYGHTDDFNYMIENLMERYPNTKL 741
Y++ V G+ V NH G L + +T + ++ G T+DF ++ L ++YP L
Sbjct: 187 YVKHLVFSMASKGWNVVVGNHRG-LGGISITSDCFYNAGWTEDFREIVNYLHQKYPQAPL 245
Query: 742 ILVGFSLGGNLITKYLGXE 798
VG S+G N++ KYLG E
Sbjct: 246 FAVGTSIGANILVKYLGEE 264
>01_06_1494 +
37756872-37757137,37757318-37757407,37758392-37758443,
37759226-37759315,37759520-37759642,37759752-37759850
Length = 239
Score = 44.8 bits (101), Expect = 9e-05
Identities = 22/75 (29%), Positives = 38/75 (50%)
Frame = +1
Query: 553 ESVYIRTYVHYSQCHGYRCAVLNHIGALHSVPVTGNRIFSYGHTDDFNYMIENLMERYPN 732
E Y++ + G V NH G L V +T + +++ G T+D +I L +YP
Sbjct: 134 EVQYVKHMAYSMATKGCNTVVSNHRG-LGGVSITSDCLYNAGWTEDLREVINYLHHKYPK 192
Query: 733 TKLILVGFSLGGNLI 777
++ VG S+G N++
Sbjct: 193 APMLCVGTSIGANIV 207
>03_05_0710 +
27038709-27038865,27039205-27039346,27039383-27039558,
27039639-27039703,27040000-27040371,27040429-27040504,
27040505-27040571,27040672-27040825,27041122-27041289,
27041392-27041502,27041612-27041722,27041864-27041881,
27041917-27042018,27042587-27042817,27043390-27043464,
27043744-27043815,27044597-27044782,27044868-27045026,
27045251-27045343,27045730-27045801,27046336-27046426,
27046669-27046847,27047252-27047333,27047526-27047636,
27047715-27047821,27048194-27048271,27048357-27048452,
27048627-27048722,27048839-27048856
Length = 1154
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +1
Query: 616 LNHIGALHSVPVTGNRIFSYGHTDDFNYM-IEN---LMERYPNTKLILVGFSLGGNLITK 783
L + LH++ + +R F G D + ++ +EN L++RY + +L+ + L GNLI K
Sbjct: 71 LRLLSPLHTIWTSNDR-FRIGIIDQYMHVQLENVVELLQRYRRDRHVLLNYMLSGNLIKK 129
>03_06_0502 -
34384285-34384503,34384595-34384755,34384854-34384931,
34385444-34385595,34385645-34385703,34385808-34385894,
34385990-34386086,34386232-34386416,34386494-34386553,
34386640-34386715,34386824-34386924,34387039-34387215,
34387302-34387399,34387505-34387604
Length = 549
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +1
Query: 361 FSGHVQTILHSLIGRVRCPWPIGGRISLVLPDKSTLTYDLYEPVGSEHEDDVTV 522
F + T++ S +G R P IGG + V P S + Y + HE V +
Sbjct: 78 FVAGINTLIQSFLG-TRLPAVIGGSYTFVAPTISIILAGRYNGIADPHEKFVRI 130
>12_01_0198 - 1461305-1463812
Length = 835
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -2
Query: 323 NGDTNKMFSMKLLSLP*ITGFWGWLFTFNIRKSIHSMTATTAKRTGDIIKQY 168
+G + +MKL++LP T FWG+ + S+H TA ++ +Y
Sbjct: 345 DGGGGRPRAMKLVALP-HTDFWGFDINSSAHLSLHECTARCMSEPSCVVFEY 395
>12_02_0305 - 17235832-17236379,17237345-17237444
Length = 215
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +3
Query: 540 RQHI*ERVHTHLCTLFAMPRISLCRSKPHRRPPQRAGNRQP 662
+Q + + H HL + +P S ++K + PP+R R P
Sbjct: 42 KQELAKYFHCHLLAIVILPLFSFAQAKQPQTPPRRNPPRAP 82
>11_04_0441 +
17781533-17781775,17782007-17782114,17782386-17782471,
17782546-17782807,17782921-17783120,17783770-17784012,
17784118-17784394,17784625-17784759,17784880-17784960,
17785311-17785406,17785661-17785756,17785834-17785890,
17785967-17786035,17786154-17786240,17786534-17786635,
17786730-17786819,17786900-17786980,17787573-17787653,
17787761-17787856,17787937-17787993,17788093-17788137,
17788218-17788346
Length = 906
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 535 GIGNTSESVYIRTYVHYSQCHGYRCAVLNHIGALHSV 645
GIG+T E VY+R + + H C +++ A+ S+
Sbjct: 539 GIGDTIEDVYLRCPIPFVSKHDNNCCPISNSWAMSSM 575
>05_01_0385 -
3009557-3010497,3010749-3010782,3012311-3012609,
3013633-3013996
Length = 545
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +1
Query: 661 RIFSYGHTDDFNYMIENLMERYPNTKLILVGFSLGGNLITKY 786
R F+Y D ++ + + R+PN ++++ G SLGG L +
Sbjct: 337 RSFAYYKLRD---VLRDQLRRHPNARVVVTGHSLGGALAAAF 375
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,812,944
Number of Sequences: 37544
Number of extensions: 528992
Number of successful extensions: 1221
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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