Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_K10
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    33   0.073
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c...    30   0.51 
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    29   0.68 
SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc...    28   2.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   8.4  

>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 32.7 bits (71), Expect = 0.073
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 650 AVKRN*PSALGLSERQVKIWFQNRRAXXKEASQK 751
           A++      L + ER V IWFQNRRA  K  S++
Sbjct: 194 AIREKIGRELNIPERSVTIWFQNRRAKSKLISRR 227


>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 355

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = +1

Query: 460 KKPNYQTQPNPGRSPQPEQMQVMLHDKNFPCKTRTKDKYRVVYSDHQRLELEKEFHYSRY 639
           KK N+++      SP     Q     ++        DK R  + + QRL+ EKEF  SR 
Sbjct: 262 KKRNHKSSYKRSLSPSTRYHQDRPDKRHGTYSLEEIDKQRKEFENRQRLQKEKEFQKSRE 321

Query: 640 ITIR 651
             ++
Sbjct: 322 AALK 325


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 121 HTRRHKQHHRSDHETRYGR 65
           H+RRH+ HH    E+++GR
Sbjct: 24  HSRRHRHHHSRHRESKHGR 42


>SPBC21B10.13c |||transcription factor, homeobox type
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +2

Query: 683 LSERQVKIWFQNRRAXXKEASQKT*RGGDEGKGRSRFRCSTRNSTTRQCYTTS 841
           ++ R+++IWFQN+R   + ++  + R   EG G +      R ST   C T++
Sbjct: 74  MTPRELQIWFQNKRQSLRRSNCLS-RNRLEGTGENSL--LRRKSTLTLCETST 123


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -1

Query: 388  LLDSPNPXWPATAYRLSLVLLVPFSENDADPES-IPP*PVRRSMRTTVALPSSDA 227
            +L SP    P   +  S  L  P S + A P + +PP P   S    V LPS+DA
Sbjct: 978  ILSSPTSE-PPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADA 1031


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,106,246
Number of Sequences: 5004
Number of extensions: 58541
Number of successful extensions: 175
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)