Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_K08
         (943 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.72 
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    29   0.95 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.2  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   3.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.1  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 14/39 (35%), Positives = 15/39 (38%)
 Frame = -2

Query: 582  PXXTXPPPPGAPGXXXXPXXXXXEPPPPPXXRXXTPGAP 466
            P  + PPPP AP     P       PPPP      P  P
Sbjct: 1710 PPMSVPPPPSAPPMPAGP----PSAPPPPLPASSAPSVP 1744



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/39 (33%), Positives = 13/39 (33%)
 Frame = -2

Query: 582  PXXTXPPPPGAPGXXXXPXXXXXEPPPPPXXRXXTPGAP 466
            P      PP  P     P      PPPPP      P AP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAP 1721


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = -2

Query: 582 PXXTXPPPPGAPGXXXXPXXXXXEPPPPPXXRXXTPGAP 466
           P    PP PGAPG    P     +PP  P      PG P
Sbjct: 501 PGVPLPPIPGAPGM---PNLNMSQPPMVPPGMALPPGMP 536


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = +3

Query: 468 GPXGFXXXXGAGGGVPXXXXRGXRXXXGPPGGGG 569
           GP GF    G  GG P     G     G PGG G
Sbjct: 229 GPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFG 262


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 17/35 (48%), Positives = 17/35 (48%)
 Frame = +1

Query: 463 SRGPXGSXSXXGRGGGFXXXXXGXXGXSXGPRGGG 567
           SRG  G  S  GRGG F     G  G   G RGGG
Sbjct: 7   SRGGRGG-SRGGRGG-FNGGRGGFGGGRGGARGGG 39


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
 Frame = -2

Query: 567 PPPP--GAPGXXXXPXXXXXEPPPPPXXRXXTPG 472
           PPPP   A G    P      PPPPP     + G
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG 373


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 567 PPPPGAPGXXXXPXXXXXEPPPPP 496
           PPPPG  G    P      PPPPP
Sbjct: 765 PPPPGVAGAGPPPP-----PPPPP 783



 Score = 25.8 bits (54), Expect = 8.8
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = -1

Query: 568 PPPPGGPXXXRXPRXXKXGTPPPAPXKXXNPXGP 467
           PPPP        P       PPPAP     P  P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -2

Query: 582 PXXTXPPPPGAPGXXXXPXXXXXEPPPP 499
           P    PPPP  PG    P      PPPP
Sbjct: 5   PPGNPPPPPPPPGFE--PPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,396,834
Number of Sequences: 5004
Number of extensions: 14106
Number of successful extensions: 73
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)