Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_K06
(879 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1... 81 3e-16
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.87
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe... 29 1.2
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At... 27 2.7
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 27 4.7
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr... 27 4.7
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 26 8.1
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 26 8.1
>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 486
Score = 80.6 bits (190), Expect = 3e-16
Identities = 54/173 (31%), Positives = 82/173 (47%), Gaps = 7/173 (4%)
Frame = +1
Query: 322 GHLTCGITQKEYAERRETLISRLVSEAPNVHKTHIVVIPAARKQFMSDKIPYVFRQNSDF 501
G LT I+ +EY RR+ + S L +++ +A + M Y + Q+ +F
Sbjct: 56 GELTPRISAQEYKTRRDRVASLL-------EDNDFMIVTSAPVRHMCGAAFYEYHQDPNF 108
Query: 502 FYLTGCLEPSAILVMIKPAHSDTFKSVLFVHEKDSHAELWEGPRTGCTAATQLFAVDEAR 681
+YLTGCLEP+A+L+M K S ++ L++ K+ + E WEG RTG T +LF ++
Sbjct: 109 YYLTGCLEPNAVLLMFKNGASGSYDCSLYLPSKNPYIEKWEGLRTGSTLGKKLFQIENVY 168
Query: 682 PVDSFSVYINKLAVSSKPSVLWYHN------EAPANPE-IHSTIRSVIRPETQ 819
S IN L S Y A + PE I T+ + R TQ
Sbjct: 169 DSSLASSVINALGKKSNRIFYNYQTGYLSKMPAASAPEFIQDTLTKLFRTSTQ 221
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 279 GQATCHTHPHLIQQG 323
GQAT THPH++Q G
Sbjct: 42 GQATDSTHPHILQPG 56
>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 490
Score = 29.1 bits (62), Expect = 0.87
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 231 PGAVERSTFSIPQGTFGQATCHTHPHLIQQGASYLRDHTK 350
PG R F+IP +C +PHL+ + + Y+ H++
Sbjct: 306 PGLHSRVEFTIPVNDLIHGSCTENPHLLVRHSIYVSIHSR 345
>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 395
Score = 28.7 bits (61), Expect = 1.2
Identities = 27/131 (20%), Positives = 52/131 (39%), Gaps = 2/131 (1%)
Frame = +1
Query: 394 SEAPNVHKTHIVVIPAARKQFMSDKIPYVFRQNSDFFYLTGC-LEPSAILVMIKPAHSDT 570
+++ ++ K H I AA S P++F D L C ++ + +
Sbjct: 196 TDSDSIGKIHFASIQAAPS--FSSSFPHIFNGAKDIPCLIPCAIDQDPYFRLTRDVSGRL 253
Query: 571 -FKSVLFVHEKDSHAELWEGPRTGCTAATQLFAVDEARPVDSFSVYINKLAVSSKPSVLW 747
FK +H + A +GP++ +A+ A+ + IN+ A S + +
Sbjct: 254 KFKKPALLHSRFFPA--LQGPQSKMSASKDSSAIFMTDTPNKIKNKINRHAFSGGGATIE 311
Query: 748 YHNEAPANPEI 780
H E NP++
Sbjct: 312 IHREKGGNPDV 322
>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 156 AVKHHKLLKSHIRNQLRCLSTIDHPPGAVERSTFSIPQGTFGQAT 290
AVKH+ SH + L T+ P E+STF P + QA+
Sbjct: 557 AVKHNLGNSSHSIMRHHTLGTLRSRPSFSEKSTFPAPLTSISQAS 601
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 245 EIYILYTTRHLRPSNLSHPSALDPTGGILLAGS 343
++YIL +RHL+ S L PS L +L+A S
Sbjct: 868 DLYILPVSRHLKNSALLIPSILYHIENLLVASS 900
>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 815 VSGRITERIVLWISGFAGASLWYHRTEGLDDTANLL 708
V I +VL + FAG SLW +DD ++L
Sbjct: 52 VYAHIIRGLVLEVGDFAGISLWMGPGNNMDDWYSIL 87
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 269 LWYRECRSLYRSRGVVNCRKASKLISY 189
+WYRECRS Y V++ + + I Y
Sbjct: 1003 VWYRECRSHYFISPVLSNQVIDEKIQY 1029
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 371 SLLSAYSFCVIPQVRCPLLDQVRMGVTGCLAE 276
S+L A++ C+ V C LD+V CLA+
Sbjct: 249 SVLPAFTECMDLTVNCIALDEVSEKAMNCLAD 280
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,539,523
Number of Sequences: 5004
Number of extensions: 73331
Number of successful extensions: 199
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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