Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_K06
         (879 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical ...    32   0.62 
U41994-13|AAK31527.2| 1425|Caenorhabditis elegans Neuronal symme...    31   0.82 
AC006607-2|AAF60372.1|  137|Caenorhabditis elegans One ig domain...    31   1.1  
AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical ...    30   2.5  
Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-lik...    28   7.7  

>AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical
           protein K12C11.1 protein.
          Length = 498

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 30/121 (24%), Positives = 47/121 (38%)
 Frame = +1

Query: 355 YAERRETLISRLVSEAPNVHKTHIVVIPAARKQFMSDKIPYVFRQNSDFFYLTGCLEPSA 534
           + E R  L+  L S+ P  +   ++     + ++ +D     FRQ S FF+  G  E S 
Sbjct: 17  FTENRHRLVDALKSKVP-ANSVVLLQGGVEKNRYNTDAADLPFRQESYFFWTFGVNE-SE 74

Query: 535 ILVMIKPAHSDTFKSVLFVHEKDSHAELWEGPRTGCTAATQLFAVDEARPVDSFSVYINK 714
               I        K+ LF    D    +W+G         + +AVDE    D  +    K
Sbjct: 75  FYGAIDVRSGG--KTTLFAPRLDPSYAIWDGKINNEQFFKEKYAVDEVVFNDKTTTIAEK 132

Query: 715 L 717
           L
Sbjct: 133 L 133


>U41994-13|AAK31527.2| 1425|Caenorhabditis elegans Neuronal symmetry
            protein 1 protein.
          Length = 1425

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 4/93 (4%)
 Frame = +3

Query: 84   IFINTKAIKRTKTMQRLRKVLPSLAVKHHKLLKSHIRNQLRCLSTIDH--PPGAVERS-- 251
            I+ N  +I RT++    +K    + + H K  K   +NQ   L +  H    G VERS  
Sbjct: 925  IYHNHHSISRTRSGSINKKPATKIELNHDKEKKEKSKNQREMLRSTSHIGGMGVVERSPP 984

Query: 252  TFSIPQGTFGQATCHTHPHLIQQGASYLRDHTK 350
            T      T      H H   +    S  R+  K
Sbjct: 985  TPEPMSATLTAGFSHVHSQTVSNALSTAREEKK 1017


>AC006607-2|AAF60372.1|  137|Caenorhabditis elegans One ig domain
           protein 1 protein.
          Length = 137

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 730 KPSVLWYHNEAPANPEIHSTIRSVIRPET 816
           +P ++WYH     NP+ + TIR  I  +T
Sbjct: 70  RPQIVWYHRGVEVNPDHNRTIRFSIHGDT 98


>AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical
            protein Y73F8A.5 protein.
          Length = 1019

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
 Frame = -3

Query: 814  FQDVSRSVSCC--GFQGLQALRCGTTERKVWMIPLTY*CIH*NCQ-LV*LRPQQTAVWQP 644
            F+ VS     C  G Q +   RC  T++++ M  L + C    C   + +   +TA   P
Sbjct: 812  FEPVSTISPACPNGNQLVVVARCVPTKKQMEM-RLPHNCPDGTCDGCLFVIIMETAQACP 870

Query: 643  CSQFEDPPTVLHDCLSREQIVHS-*KCHCVL 554
              +  D  T+  +CL+ +Q +HS  K HCV+
Sbjct: 871  VCESNDYETINGECLNGKQTIHSIPKKHCVI 901


>Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical
           protein F01G4.1 protein.
          Length = 1474

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 230 PWSGREIYILYTTRHLRPSNLSHPSALDPTG 322
           P+   +I+ L+  R  RP+ +S PS +DP G
Sbjct: 147 PYDLMKIFNLHQIRCNRPTTISVPSGIDPVG 177


>Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical
           protein F01G4.1 protein.
          Length = 1474

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 230 PWSGREIYILYTTRHLRPSNLSHPSALDPTG 322
           P+   +I+ L+  R  RP+ +S PS +DP G
Sbjct: 147 PYDLMKIFNLHQIRCNRPTTISVPSGIDPVG 177


>AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-like
           protein protein.
          Length = 1474

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 230 PWSGREIYILYTTRHLRPSNLSHPSALDPTG 322
           P+   +I+ L+  R  RP+ +S PS +DP G
Sbjct: 147 PYDLMKIFNLHQIRCNRPTTISVPSGIDPVG 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,759,920
Number of Sequences: 27780
Number of extensions: 425564
Number of successful extensions: 1075
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)