Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_K05
         (901 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   8.8  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 718 PWALATLLISSIINTV 671
           PW L TL++ +I+N +
Sbjct: 63  PWILVTLIVLAIVNVM 78


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 13/75 (17%), Positives = 36/75 (48%)
 Frame = -3

Query: 794 DSIISWYKSFPSRVRSXTPANTRVTTMGFGNIVDQFHNQYSFAHTSSAKQPNLSSFGIRS 615
           +S+ ++YK   S+V++   ++ R+T +   ++ D     +   +  +  +PN  +  +  
Sbjct: 584 ESLGNYYKIRDSKVKTLDASHNRITELSPLSVPDSVELLFINNNYINLVRPNTFTDKVNL 643

Query: 614 EQIDDFYTSYENLLL 570
            ++D +    E + L
Sbjct: 644 TRVDMYANMIETMEL 658


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 306 RSPRLVLEVAQHLGENTVRTIAMDGTE 386
           RSP  + ++AQ+ G N +   A+D T+
Sbjct: 897 RSPDTLRKIAQNRGTNPLAPDAVDLTQ 923


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,949
Number of Sequences: 438
Number of extensions: 5256
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)