Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_K04
         (1291 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.8  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   7.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   7.4  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 21/73 (28%), Positives = 22/73 (30%), Gaps = 3/73 (4%)
 Frame = +1

Query: 691 TLAXXVPXLXXAPHXYPXXHXPXXPTAYXTGAXXXVLXVPXPXXXXPRP---PXAPPXXS 861
           T    VP     P   P    P  P +   GA       P      P P   P APP   
Sbjct: 412 TSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471

Query: 862 XXPXPPSXXXPXP 900
             P PP    P P
Sbjct: 472 AAPAPPPAPAPAP 484


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/47 (29%), Positives = 16/47 (34%)
 Frame = +1

Query: 808  PXPXXXXPRPPXAPPXXSXXPXPPSXXXPXPTXXGXXRPXXLXXXLQ 948
            P P    P PP APP  +  P  P    P  +      P      LQ
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPGDRSALLQ 1754


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +1

Query: 808 PXPXXXXPRPPXAPPXXSXXPXPPSXXXP 894
           P P    P P  APP  S  P  PS   P
Sbjct: 145 PRPSIPPPSPASAPPIPSKAPPIPSSLPP 173



 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +1

Query: 814 PXXXXPRPPXAPPXXSXXPXPPSXXXPXPT 903
           P    PRP   PP  +  P  PS   P P+
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAPPIPS 169


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/38 (31%), Positives = 13/38 (34%)
 Frame = +1

Query: 808 PXPXXXXPRPPXAPPXXSXXPXPPSXXXPXPTXXGXXR 921
           P P    P PP  PP  +    PP    P     G  R
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,698,700
Number of Sequences: 5004
Number of extensions: 12817
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 703461012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)