Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_K04
         (1291 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    32   0.77 
AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical ...    32   0.77 
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    30   3.1  
U55366-3|AAY86188.1|  118|Caenorhabditis elegans Hypothetical pr...    29   7.1  
AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical ...    29   9.5  

>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 32.3 bits (70), Expect = 0.77
 Identities = 15/43 (34%), Positives = 16/43 (37%)
 Frame = +2

Query: 386 PSPKXPXFPXTPHXRXHXPXXPRIHXPXXXSXPPXVPAXAXPR 514
           P P  P  P TP  R   P  P +  P     PP  P    PR
Sbjct: 139 PPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPR 181


>AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical
           protein Y53H1A.1 protein.
          Length = 613

 Score = 32.3 bits (70), Expect = 0.77
 Identities = 16/57 (28%), Positives = 19/57 (33%)
 Frame = +2

Query: 347 HSRXXPXXFPAHXPSPKXPXFPXTPHXRXHXPXXPRIHXPXXXSXPPXVPAXAXPRP 517
           H +  P  FP   P P  P  P       H P  PR   P         P+   P+P
Sbjct: 128 HFQGPPQHFPPGPPRPHFPGPPGPHRPPEHYPGPPRPQAPAAPPPKSLFPSAQKPKP 184


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 23/78 (29%), Positives = 24/78 (30%), Gaps = 3/78 (3%)
 Frame = +1

Query: 676 PPXXXTLAXXVPXLXXAPHXYPXXHXPXX---PTAYXTGAXXXVLXVPXPXXXXPRPPXA 846
           PP        VP     P  YP    P     P  Y   A      VP P     +PP  
Sbjct: 82  PPLASYPQNAVPVPAPPPAPYPQHAVPAPAPPPAPYPQHA------VPAPAPYQQQPPPP 135

Query: 847 PPXXSXXPXPPSXXXPXP 900
           PP     P PP    P P
Sbjct: 136 PPPPHYPPPPPHYPPPPP 153


>U55366-3|AAY86188.1|  118|Caenorhabditis elegans Hypothetical
           protein F41F3.8 protein.
          Length = 118

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 814 PXXXXPRPPXAPPXXSXXPXPPSXXXPXPT 903
           P      PP APP     P PP    P PT
Sbjct: 39  PRPRVAAPPFAPPPPPSPPLPPKCECPPPT 68


>AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical
           protein T20B6.3 protein.
          Length = 259

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = -3

Query: 899 GXGXXXDGGXGXXDXXGGAXGGRGXXXXGXG 807
           G G   DGG G     GG  GG G    G G
Sbjct: 118 GYGGGGDGGGGYGGYGGGGYGGMGGGPGGYG 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,451,555
Number of Sequences: 27780
Number of extensions: 101218
Number of successful extensions: 580
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3610322468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)