Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_K02
         (843 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   3.0  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   5.3  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    22   7.0  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   9.2  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 810 QHLFQQMSRTQHLATLHQYSDFXGPQPAS 724
           +HL Q+ + T+H  T H         PAS
Sbjct: 271 RHLIQRRTHTRHTTTSHNTRGTPRTTPAS 299


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 578 TLEGHLQDLKGFSKPKIKFEQYETPAHIAAIALYT 682
           T   HL+D   + KP++      T +   A A YT
Sbjct: 177 TAAPHLRDSPNYIKPQLHVSTGSTSSPTIASATYT 211


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 303 PCFKSICFFNCRSSNIFLFVNSL 235
           P FK+  FF+   S +F  +NSL
Sbjct: 216 PEFKAARFFSIDRSTLFSVLNSL 238


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 722 LDAGCGPWK 748
           LD G GPWK
Sbjct: 465 LDCGFGPWK 473


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,939
Number of Sequences: 336
Number of extensions: 4325
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23244256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)