Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_K02
         (843 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46241-7|CAA86320.1|  214|Caenorhabditis elegans Hypothetical pr...    47   2e-05
AF067222-3|AAC17019.1|  292|Caenorhabditis elegans Hypothetical ...    29   4.1  

>Z46241-7|CAA86320.1|  214|Caenorhabditis elegans Hypothetical
           protein C38D4.9 protein.
          Length = 214

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 22/49 (44%), Positives = 29/49 (59%)
 Frame = +2

Query: 593 LQDLKGFSKPKIKFEQYETPAHIAAIALYTIQTQFGDLEDKLILDAGCG 739
           L +L+GF KPKIK EQY T + +A   +  I    G  E K ++D GCG
Sbjct: 10  LNELEGFEKPKIKLEQYATSSELAVSMMEMIDETIG-FEGKKLIDIGCG 57


>AF067222-3|AAC17019.1|  292|Caenorhabditis elegans Hypothetical
           protein H11E01.1 protein.
          Length = 292

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 70  QSCNVIFLFVKSKLLTN*ILFQTSYLKT-HRFLKHYMLSPNSYLETLDGV 216
           Q+C+V  L + S    N  L++ +  K  + FLKH+M   N  LE L+ +
Sbjct: 190 QTCSVSNLLIVSTNSENVTLWEPNTAKDLNLFLKHWMQGSNGRLERLEAI 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,892,243
Number of Sequences: 27780
Number of extensions: 394951
Number of successful extensions: 1044
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)