Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_K01
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    27   3.6  
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    27   4.8  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    26   8.4  

>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 451 GXPGWRYQEVLANSLATWSHLMTHKVREAR 362
           G  GWR  E+L+ SL+  S  +  K RE R
Sbjct: 824 GSYGWRSPEILSGSLSQQSKEIQVKTREGR 853


>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 695 SIFTVMKSNWRQILYYXLSM*PKNILYLIWL 787
           S+   + ++W  +L+  L   P  I+YLIWL
Sbjct: 38  SVSLTLTASWYTVLWAFLPFWPFLIVYLIWL 68


>SPBC2F12.05c |||sterol binding ankyrin repeat
            protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
 Frame = +2

Query: 437  PPWXPNW-QATKPTVRERNAAMFNNQ 511
            PPW P W  A K  V   +   FNN+
Sbjct: 1258 PPWSPRWFSAAKHPVTGEDYWQFNNE 1283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,221,099
Number of Sequences: 5004
Number of extensions: 62102
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)