Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_K01
         (900 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.2  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   5.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 478  NCRLCRLPVGXPGWRYQEVLANSLATWSHLMTHKVREA 365
            N RL  L +G   W  +      L++W     HKV +A
Sbjct: 913  NARLVELSLGSNPWSCRCKFLQELSSWVSDNAHKVVDA 950


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = -3

Query: 664 IWNLNFLFTF-CQTSIKHSIED*TCSC*HIFVCWYNLCVSWGSDNK 530
           IW L   F+  CQ    +S+ D   +   +   W     ++GSD K
Sbjct: 5   IWWLILYFSIVCQAKAHYSLRDFKANIFQVKYQWKYFDYNFGSDEK 50


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = +2

Query: 443  WXPNWQATKPTVRERNAAMFNNQLMSD 523
            W P   A +PT ++ N+     ++M +
Sbjct: 1154 WTPKMMAVEPTDKQANSKTRRQEMMRE 1180


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,167
Number of Sequences: 438
Number of extensions: 4299
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)