Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_J24
(899 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 277 1e-74
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 274 7e-74
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 116 2e-26
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 116 2e-26
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 90 2e-18
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 89 3e-18
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 79 4e-15
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 78 1e-14
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 71 9e-13
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 43 3e-04
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 43 3e-04
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 43 3e-04
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 39 0.004
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 39 0.004
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 37 0.023
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 36 0.052
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 36 0.052
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 35 0.069
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 35 0.069
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 35 0.069
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 35 0.069
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 33 0.37
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 32 0.64
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 31 0.85
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 31 1.5
U41992-4|AAL02506.2| 876|Caenorhabditis elegans Hypothetical pr... 31 1.5
AL117193-12|CAB60305.1| 415|Caenorhabditis elegans Hypothetical... 31 1.5
U41104-4|AAK67239.1| 388|Caenorhabditis elegans Nuclear hormone... 30 2.6
AL031627-6|CAA20958.1| 338|Caenorhabditis elegans Hypothetical ... 30 2.6
AL009246-7|CAA15840.2| 347|Caenorhabditis elegans Hypothetical ... 30 2.6
AF083231-1|AAD03689.1| 388|Caenorhabditis elegans nuclear recep... 30 2.6
AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical ... 30 2.6
AL132862-30|CAB60565.3| 716|Caenorhabditis elegans Hypothetical... 29 3.4
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z74472-5|CAA98943.1| 802|Caenorhabditis elegans Hypothetical pr... 29 4.5
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 29 4.5
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 29 4.5
Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical p... 29 6.0
Z69792-3|CAA93666.1| 284|Caenorhabditis elegans Hypothetical pr... 29 6.0
U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical pr... 29 6.0
U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z81143-5|CAB03518.2| 370|Caenorhabditis elegans Hypothetical pr... 28 7.9
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 277 bits (678), Expect = 1e-74
Identities = 144/181 (79%), Positives = 154/181 (85%), Gaps = 8/181 (4%)
Frame = +3
Query: 120 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 299
MVNFTVDEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTR
Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTR 60
Query: 300 KDEQDRCITIKSTAISMFFELEEKDLVFITNPDQRE------KSEK--GFLINLIDSPGH 455
KDEQ+RCITIKSTAIS+FFELE+KDL F+ +Q E K EK GFLINLIDSPGH
Sbjct: 61 KDEQERCITIKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGH 120
Query: 456 VDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAGRIKPILFMNKMDRALLELQ 635
VDFSSEVTAALRVTDGAL QTETVLRQAIA RIKP+LFMNKMDRALLELQ
Sbjct: 121 VDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQ 180
Query: 636 L 638
L
Sbjct: 181 L 181
Score = 32.7 bits (71), Expect = 0.37
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = +1
Query: 625 LSSNLKAEXLYXTFQRIVXNVTVIIA 702
L L AE L+ TFQRIV N+ VIIA
Sbjct: 177 LELQLGAEELFQTFQRIVENINVIIA 202
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 274 bits (671), Expect = 7e-74
Identities = 143/181 (79%), Positives = 153/181 (84%), Gaps = 8/181 (4%)
Frame = +3
Query: 120 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 299
MVNFTVDEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTR
Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTR 60
Query: 300 KDEQDRCITIKSTAISMFFELEEKDLVFITNPDQRE------KSEK--GFLINLIDSPGH 455
KDEQ+RCITIKSTAIS+FFELE+KDL F+ +Q E K EK GFLINLIDSPGH
Sbjct: 61 KDEQERCITIKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGH 120
Query: 456 VDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAGRIKPILFMNKMDRALLELQ 635
VDFSSEVTAAL VTDGAL QTETVLRQAIA RIKP+LFMNKMDRALLELQ
Sbjct: 121 VDFSSEVTAALGVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQ 180
Query: 636 L 638
L
Sbjct: 181 L 181
Score = 32.7 bits (71), Expect = 0.37
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = +1
Query: 625 LSSNLKAEXLYXTFQRIVXNVTVIIA 702
L L AE L+ TFQRIV N+ VIIA
Sbjct: 177 LELQLGAEELFQTFQRIVENINVIIA 202
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 116 bits (279), Expect = 2e-26
Identities = 69/158 (43%), Positives = 94/158 (59%)
Frame = +3
Query: 171 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISM 350
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R IT+KS+ IS+
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSSGISL 78
Query: 351 FFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXX 530
E LINLIDSPGHVDFS EVT+AL ++D AL
Sbjct: 79 LCE--------------------PLLINLIDSPGHVDFSGEVTSALILSDIALLLIDVIE 118
Query: 531 XXXXQTETVLRQAIAGRIKPILFMNKMDRALLELQLES 644
QTE ++RQ I IL +NK+DR +EL++ S
Sbjct: 119 GICSQTEALIRQVIRNGQAMILVINKIDRLRVELKMSS 156
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 116 bits (279), Expect = 2e-26
Identities = 69/158 (43%), Positives = 94/158 (59%)
Frame = +3
Query: 171 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISM 350
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R IT+KS+ IS+
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSSGISL 78
Query: 351 FFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXX 530
E LINLIDSPGHVDFS EVT+AL ++D AL
Sbjct: 79 LCE--------------------PLLINLIDSPGHVDFSGEVTSALILSDIALLLIDVIE 118
Query: 531 XXXXQTETVLRQAIAGRIKPILFMNKMDRALLELQLES 644
QTE ++RQ I IL +NK+DR +EL++ S
Sbjct: 119 GICSQTEALIRQVIRNGQAMILVINKIDRLRVELKMSS 156
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 90.2 bits (214), Expect = 2e-18
Identities = 58/163 (35%), Positives = 86/163 (52%), Gaps = 1/163 (0%)
Frame = +3
Query: 153 MMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGI-IAGARAGETRFTDTRKDEQDRCITI 329
+MD +RN+++ H+ HGK+T D L+ + A + RFTD E+ R +I
Sbjct: 125 LMDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSI 184
Query: 330 KSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 509
KS +S I D R KS +L+N+ID+PGHV+FS E+TA+ R+ DG +
Sbjct: 185 KSQPVS------------IVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADGVV 229
Query: 510 XXXXXXXXXXXQTETVLRQAIAGRIKPILFMNKMDRALLELQL 638
TE +R AI R+ L ++K+DR LLEL+L
Sbjct: 230 VMVDAHEGVMMNTERAIRHAIQERLAVTLCISKIDRLLLELKL 272
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 89.4 bits (212), Expect = 3e-18
Identities = 58/162 (35%), Positives = 85/162 (52%), Gaps = 1/162 (0%)
Frame = +3
Query: 156 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGI-IAGARAGETRFTDTRKDEQDRCITIK 332
MD +RN+++ H+ HGK+T D L+ + A + RFTD E+ R +IK
Sbjct: 1 MDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSIK 60
Query: 333 STAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALX 512
S +S I D R KS +L+N+ID+PGHV+FS E+TA+ R+ DG +
Sbjct: 61 SQPVS------------IVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADGVVV 105
Query: 513 XXXXXXXXXXQTETVLRQAIAGRIKPILFMNKMDRALLELQL 638
TE +R AI R+ L ++K+DR LLEL+L
Sbjct: 106 MVDAHEGVMMNTERAIRHAIQERLAVTLCISKIDRLLLELKL 147
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 79.0 bits (186), Expect = 4e-15
Identities = 56/150 (37%), Positives = 78/150 (52%), Gaps = 2/150 (1%)
Frame = +3
Query: 174 IRNMSVIAHVDHGKSTLTDSLVSKAGII--AGARAGETRFTDTRKDEQDRCITIKSTAIS 347
+RN+ VIAHVD GK+T+T+ L+ AG I AG TD E++R IT++S A++
Sbjct: 25 LRNIGVIAHVDAGKTTVTERLLYLAGAIHVAGHVDKGNTVTDFLDIERERGITVQSAAVN 84
Query: 348 MFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXX 527
+ + KG INLID+PGHVDF EV +RV DG +
Sbjct: 85 LDW--------------------KGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGS 124
Query: 528 XXXXXQTETVLRQAIAGRIKPILFMNKMDR 617
QT TV RQ+ ++ F+NKMD+
Sbjct: 125 AGVQPQTLTVWRQSSKFKLPAHFFINKMDK 154
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 77.8 bits (183), Expect = 1e-14
Identities = 51/147 (34%), Positives = 74/147 (50%)
Frame = +3
Query: 174 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMF 353
IRN ++AHVDHGKSTL D L+ G + G+ + D + E++R IT+K+ ++
Sbjct: 42 IRNFGIVAHVDHGKSTLADRLLEMCGAVP---PGQKQMLDKLQVERERGITVKAQTAAL- 97
Query: 354 FELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXX 533
+G+L+NLID+PGHVDFS+EV+ +L V DG L
Sbjct: 98 -------------------RHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG 138
Query: 534 XXXQTETVLRQAIAGRIKPILFMNKMD 614
QT A I+ I +NK+D
Sbjct: 139 VQAQTIANFWLAFEKNIQIIPVINKID 165
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 71.3 bits (167), Expect = 9e-13
Identities = 54/148 (36%), Positives = 72/148 (48%)
Frame = +3
Query: 174 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMF 353
IRN+ + AH+D GK+T+T+ ++ AG I E R D D F
Sbjct: 44 IRNIGISAHIDSGKTTVTERILYYAGRIDSMH--EVRGKDDVGATMD------------F 89
Query: 354 FELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXX 533
+LE + + I + G IN+ID+PGHVDF+ EV ALRV DGA+
Sbjct: 90 MDLERQRGITIQSA-ATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCGVGG 148
Query: 534 XXXQTETVLRQAIAGRIKPILFMNKMDR 617
QT TV RQ + I F+NKMDR
Sbjct: 149 VQSQTFTVNRQLARYNVPFICFVNKMDR 176
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 43.2 bits (97), Expect = 3e-04
Identities = 41/148 (27%), Positives = 61/148 (41%), Gaps = 3/148 (2%)
Frame = +3
Query: 180 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 359
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI + F
Sbjct: 51 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINA------FH 104
Query: 360 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXX 539
LE E +++ + ID PGH D+ + +GA+
Sbjct: 105 LE------------YETAKRHYA--HIDCPGHADYIKNMITGAAQMEGAILVVAATDGPM 150
Query: 540 XQTETVL---RQAIAGRIKPILFMNKMD 614
QT L RQ ++FMNK+D
Sbjct: 151 PQTREHLLLARQVGVPLDNIVVFMNKVD 178
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 43.2 bits (97), Expect = 3e-04
Identities = 41/148 (27%), Positives = 61/148 (41%), Gaps = 3/148 (2%)
Frame = +3
Query: 180 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 359
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI + F
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINA------FH 105
Query: 360 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXX 539
LE E +++ + ID PGH D+ + +GA+
Sbjct: 106 LE------------YETAKRHYA--HIDCPGHADYIKNMITGAAQMEGAILVVAATDGPM 151
Query: 540 XQTETVL---RQAIAGRIKPILFMNKMD 614
QT L RQ ++FMNK+D
Sbjct: 152 PQTREHLLLARQVGVPLDNIVVFMNKVD 179
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 43.2 bits (97), Expect = 3e-04
Identities = 41/148 (27%), Positives = 61/148 (41%), Gaps = 3/148 (2%)
Frame = +3
Query: 180 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 359
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI + F
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINA------FH 105
Query: 360 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXX 539
LE E +++ + ID PGH D+ + +GA+
Sbjct: 106 LE------------YETAKRHYA--HIDCPGHADYIKNMITGAAQMEGAILVVAATDGPM 151
Query: 540 XQTETVL---RQAIAGRIKPILFMNKMD 614
QT L RQ ++FMNK+D
Sbjct: 152 PQTREHLLLARQVGVPLDNIVVFMNKVD 179
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 39.1 bits (87), Expect = 0.004
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Frame = +3
Query: 168 RNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAIS 347
+++ N+ V+ HVD GKSTL L+ ++ ++R D K E R
Sbjct: 168 KDLINLIVVGHVDAGKSTLMGHLLHDLEVV------DSRTIDKFKHEAARNGKASFAYAW 221
Query: 348 MFFELEEKDLVFITNPDQREKSEKGF-LINLIDSPGHVDFSSEVTAALRVTDGAL 509
+ E EE+ +T R E I L+D+PGH DF S + D A+
Sbjct: 222 VLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAI 276
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 39.1 bits (87), Expect = 0.004
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Frame = +3
Query: 168 RNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAIS 347
+++ N+ V+ HVD GKSTL L+ ++ ++R D K E R
Sbjct: 186 KDLINLIVVGHVDAGKSTLMGHLLHDLEVV------DSRTIDKFKHEAARNGKASFAYAW 239
Query: 348 MFFELEEKDLVFITNPDQREKSEKGF-LINLIDSPGHVDFSSEVTAALRVTDGAL 509
+ E EE+ +T R E I L+D+PGH DF S + D A+
Sbjct: 240 VLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAI 294
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 36.7 bits (81), Expect = 0.023
Identities = 23/66 (34%), Positives = 33/66 (50%)
Frame = +3
Query: 420 GFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAGRIKPILF 599
GFLI ID+PGH FS+ T + D A+ QT L+ I G+ ++
Sbjct: 550 GFLI--IDTPGHESFSNLRTRGSSLCDFAILVVDIMHGLEPQTIESLKLLIKGKTPFVIA 607
Query: 600 MNKMDR 617
+NK+DR
Sbjct: 608 LNKIDR 613
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 35.5 bits (78), Expect = 0.052
Identities = 33/110 (30%), Positives = 50/110 (45%)
Frame = +3
Query: 180 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 359
N+ I H+DHGK+TLT ++ A+ + D K+E+ R ITI I
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIGY--- 103
Query: 360 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 509
E L ++ D S+ F+ N+I +D + V AA TDG +
Sbjct: 104 --ESPLRRYSHTDCPGHSD--FIKNMICGTSQMDVAVLVIAA---TDGVM 146
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 35.5 bits (78), Expect = 0.052
Identities = 33/110 (30%), Positives = 50/110 (45%)
Frame = +3
Query: 180 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 359
N+ I H+DHGK+TLT ++ A+ + D K+E+ R ITI I
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIGY--- 103
Query: 360 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 509
E L ++ D S+ F+ N+I +D + V AA TDG +
Sbjct: 104 --ESPLRRYSHTDCPGHSD--FIKNMICGTSQMDVAVLVIAA---TDGVM 146
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 35.1 bits (77), Expect = 0.069
Identities = 35/118 (29%), Positives = 55/118 (46%)
Frame = +3
Query: 156 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 335
M K++ N+ VI HVD GKST T L+ K G I R E +F + E + + K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKY 56
Query: 336 TAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 509
+ + E + + I + ++ K + I +ID+PGH DF + D A+
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETAK-YYITIIDAPGHRDFIKNMITGTSQADCAV 113
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 35.1 bits (77), Expect = 0.069
Identities = 35/118 (29%), Positives = 55/118 (46%)
Frame = +3
Query: 156 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 335
M K++ N+ VI HVD GKST T L+ K G I R E +F + E + + K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKY 56
Query: 336 TAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 509
+ + E + + I + ++ K + I +ID+PGH DF + D A+
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETAK-YYITIIDAPGHRDFIKNMITGTSQADCAV 113
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 35.1 bits (77), Expect = 0.069
Identities = 35/118 (29%), Positives = 55/118 (46%)
Frame = +3
Query: 156 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 335
M K++ N+ VI HVD GKST T L+ K G I R E +F + E + + K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKY 56
Query: 336 TAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 509
+ + E + + I + ++ K + I +ID+PGH DF + D A+
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETAK-YYITIIDAPGHRDFIKNMITGTSQADCAV 113
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 35.1 bits (77), Expect = 0.069
Identities = 35/118 (29%), Positives = 55/118 (46%)
Frame = +3
Query: 156 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 335
M K++ N+ VI HVD GKST T L+ K G I R E +F + E + + K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKY 56
Query: 336 TAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 509
+ + E + + I + ++ K + I +ID+PGH DF + D A+
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETAK-YYITIIDAPGHRDFIKNMITGTSQADCAV 113
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 32.7 bits (71), Expect = 0.37
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 156 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 251
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 31.9 bits (69), Expect = 0.64
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = -2
Query: 574 AIA*RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWS 395
AI ++ + T +T STT+ P +T + + +E T S+ P L RW
Sbjct: 692 AIFAEASTGIITTDEETTSTTSTTPEITSTKEIVTESAITQTSVSVVESSTPRQLPERWK 751
Query: 394 GFVMNTK 374
V K
Sbjct: 752 AIVNKFK 758
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 31.5 bits (68), Expect = 0.85
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +3
Query: 159 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 284
D +R ++++ HVDHGK+TL D++ + I AG G T+
Sbjct: 151 DLERRPPIVTIMGHVDHGKTTLLDAM-RNSQIAAGEFGGITQ 191
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/67 (22%), Positives = 30/67 (44%)
Frame = +3
Query: 417 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAGRIKPIL 596
KG + +D+PGH F+S + D + QT ++ A ++ ++
Sbjct: 202 KGRRVTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKEQTAQSIKFAKDANVQLVV 261
Query: 597 FMNKMDR 617
+NK+D+
Sbjct: 262 AVNKIDK 268
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -2
Query: 559 STVSVCTHTPDTQSTTTRAPSVTRS-AAVTSEEKSTCPGESIKLIKKP 419
+T + T T T +TTT P+ T + A TSE +T P + + KP
Sbjct: 222 TTPTTTTTTTTTPTTTTTTPTTTTTPATTTSETTTTTPTTTTQTTTKP 269
>U41992-4|AAL02506.2| 876|Caenorhabditis elegans Hypothetical
protein F32E10.3 protein.
Length = 876
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -2
Query: 559 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKK 422
+T + T + +TTT APS T + VT K P E KL+KK
Sbjct: 764 TTAAPSTKPAEETTTTTEAPSTT-TKPVTVAVKKVSPEEMEKLVKK 808
>AL117193-12|CAB60305.1| 415|Caenorhabditis elegans Hypothetical
protein Y105C5A.23 protein.
Length = 415
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = +1
Query: 211 ASQPSRTRWFPRPVSLLVREPERPVSLTRVRTNKTVASPLNLRPSLCSSSLKRKI*YSSQ 390
AS+ + + F R V+ ++EPE+P++ R+ + PL RPS+ S +
Sbjct: 271 ASEWNPLKTFSRHVN--IKEPEKPMTTPRIVVSDETEVPLTQRPSISPSEASAVMRTGVH 328
Query: 391 TLTS 402
T TS
Sbjct: 329 TSTS 332
>U41104-4|AAK67239.1| 388|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 16 protein.
Length = 388
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -2
Query: 388 VMNTKSFSSSSKN-IEMAVDLMVMQRSCSSLRVSVKRVSPALAPAMIPALETNESVRVDL 212
V N K++S N ++ +++ M R+C ++ ++PA +P +T V +DL
Sbjct: 42 VSNRKTYSCQGNNDCDVTINIRCMCRACRYIKCIEVGMNPAGVQQRLPPSKTLVEVSMDL 101
Query: 211 P 209
P
Sbjct: 102 P 102
>AL031627-6|CAA20958.1| 338|Caenorhabditis elegans Hypothetical
protein Y102A5C.15 protein.
Length = 338
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -2
Query: 442 SIKLIKKPFSLFSRWSGFVMNTKSFSSSSKNIEMAVDLMVMQ 317
S+ L+ PF L +R +G+ + FSS S + MAV ++ +Q
Sbjct: 68 SVTLLGIPFILATRLAGYSLGLLKFSSYSFLVTMAVSVLSLQ 109
>AL009246-7|CAA15840.2| 347|Caenorhabditis elegans Hypothetical
protein C47F8.8 protein.
Length = 347
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 536 HTRHTVNNHKGSISDTECSCYFRREINV 453
H T H G IS T C+ +FRR I +
Sbjct: 15 HNTETTRRHFGIISCTACAAFFRRSIGM 42
>AF083231-1|AAD03689.1| 388|Caenorhabditis elegans nuclear receptor
NHR-16 protein.
Length = 388
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -2
Query: 388 VMNTKSFSSSSKN-IEMAVDLMVMQRSCSSLRVSVKRVSPALAPAMIPALETNESVRVDL 212
V N K++S N ++ +++ M R+C ++ ++PA +P +T V +DL
Sbjct: 42 VSNRKTYSCQGNNDCDVTINIRCMCRACRYIKCIEVGMNPAGVQQRLPPSKTLVEVSMDL 101
Query: 211 P 209
P
Sbjct: 102 P 102
>AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical
protein F43E2.3 protein.
Length = 631
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 529 DTQSTTTRAPSVTRSAAVTSEEKSTCPGESIK 434
D+ +T R+P TRS ++TS + C G+ I+
Sbjct: 174 DSANTILRSPYSTRSDSITSVDSGQCSGDQIE 205
>AL132862-30|CAB60565.3| 716|Caenorhabditis elegans Hypothetical
protein Y73F8A.1 protein.
Length = 716
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +3
Query: 105 HKPSKMVNFTVDEIRGMMDKKRN-IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGET 281
H P K+ DE+ M ++KRN + N A+++ + +S+ S I G A
Sbjct: 610 HVPEKVAEDIADEVARMTEQKRNYMENHRDYANLNRRVDQMQESVFSIVDRIEGVNATLQ 669
Query: 282 RFTDTRKDEQD 314
R +QD
Sbjct: 670 TIEKQRVQQQD 680
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 29.1 bits (62), Expect = 4.5
Identities = 29/110 (26%), Positives = 44/110 (40%)
Frame = +3
Query: 180 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 359
NM + HVD GKST+ L+ G++ R E + + E+ R S + E
Sbjct: 111 NMVFVGHVDAGKSTIGGQLMFLTGMV-DKRTLEKYEREAK--EKGRESWYLSWCMDTNDE 167
Query: 360 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 509
EK E ++ F I +D+PGH F + D A+
Sbjct: 168 EREKGKTVEVGRAYFETEKRHFTI--LDAPGHKSFVPNMIVGANQADLAV 215
>Z74472-5|CAA98943.1| 802|Caenorhabditis elegans Hypothetical
protein F23H12.5 protein.
Length = 802
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 559 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCP 449
ST + T T T +TTT AP+ T + T+E P
Sbjct: 210 STSTTTTTTTSTTTTTTEAPTTTTTIKTTTESIEPIP 246
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 207 DRRGRSQTCCGYSASCPSSHG 145
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
C.elegans RNA polymeraseII largest subunit (ama-1 IV)
gene, complete cds. ).
Length = 1859
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 207 DRRGRSQTCCGYSASCPSSHG 145
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 122 GEFHGRRDPWDDGQEAEYPQHVCDR 196
GEFHG WD+ ++EY + DR
Sbjct: 666 GEFHGTTKSWDNITKSEYGTFLLDR 690
>Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 122 GEFHGRRDPWDDGQEAEYPQHVCDR 196
GEFHG WD+ ++EY + DR
Sbjct: 666 GEFHGTTKSWDNITKSEYGTFLLDR 690
>Z69792-3|CAA93666.1| 284|Caenorhabditis elegans Hypothetical
protein F40E10.5 protein.
Length = 284
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = -2
Query: 541 THTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESI---KLIKKPFSLF 407
T T T +TTT AP++ + + T+E+ +T +I + +K FS F
Sbjct: 218 TTTTTTTTTTTEAPTMPEAVSSTTEQSTTTTAAAIIAEETKEKEFSAF 265
>U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical protein
R08E3.1b protein.
Length = 1465
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -2
Query: 559 STVSVCTHTPDTQSTTTRAPSVTRSAAVTS 470
STVSV T T ST+T APS ++S V++
Sbjct: 1044 STVSVITSTTMLPSTSTVAPSTSQSTIVST 1073
>U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical protein
R08E3.1a protein.
Length = 1512
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -2
Query: 559 STVSVCTHTPDTQSTTTRAPSVTRSAAVTS 470
STVSV T T ST+T APS ++S V++
Sbjct: 1044 STVSVITSTTMLPSTSTVAPSTSQSTIVST 1073
>Z81143-5|CAB03518.2| 370|Caenorhabditis elegans Hypothetical
protein ZK265.7 protein.
Length = 370
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 562 RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKST 455
++T + T T T +TTT P+ + A + +KST
Sbjct: 163 KTTTTTTTSTTSTSTTTTEKPTTATTTARVTPKKST 198
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,526,370
Number of Sequences: 27780
Number of extensions: 364168
Number of successful extensions: 1379
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 1252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1364
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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