Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_J22
         (945 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.76 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   0.92 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   1.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   2.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.76
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 438  PPPPPPPXXGG 406
            PPPPPPP   G
Sbjct: 1355 PPPPPPPPSSG 1365


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +1

Query: 430 GGGXXXXKXKPPPPPXXAXGP 492
           G      K  PPPPP  + GP
Sbjct: 333 GDSDTPPKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 5.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 834 PXXPXPPPPP 863
           P  P PPPPP
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.6 bits (46), Expect(2) = 0.92
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 435 PPPPPPXXGG 406
           PPPPPP   G
Sbjct: 343 PPPPPPSSSG 352



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 828 PPPXXPXPPPP 860
           PP   P PPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 831 PPXXPXPPPPP 863
           PP    PPPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 438 PPPPPPPXXG 409
           PPPPPP   G
Sbjct: 343 PPPPPPSSSG 352



 Score = 20.6 bits (41), Expect(2) = 0.92
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -1

Query: 438 PPPPPPP 418
           P PPPPP
Sbjct: 341 PAPPPPP 347


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -1

Query: 453 FXXXXPPPPPPPXXGG 406
           F    P PPPPP  GG
Sbjct: 369 FDLDEPLPPPPPIRGG 384



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 843 PXPPPPPXR 869
           P PPPPP R
Sbjct: 374 PLPPPPPIR 382


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 819  RPXPPPXXPXPPPPPXR 869
            R  P    P PPPPP R
Sbjct: 1849 RNIPVSGSPEPPPPPPR 1865


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +3

Query: 807 PXXPRPXPPPXXPXPPPP 860
           P  P   PPP  P   PP
Sbjct: 39  PPNPSQGPPPGGPPGAPP 56



 Score = 21.8 bits (44), Expect = 9.3
 Identities = 10/35 (28%), Positives = 11/35 (31%)
 Frame = +1

Query: 817 PGPXPXXPXPXPPPXXXAPPPXXPXXXPXXPXXXP 921
           PGP P        P   +PP       P  P   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,061
Number of Sequences: 438
Number of extensions: 10439
Number of successful extensions: 45
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30960384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)