Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_J21
(863 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom... 36 0.007
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 29 1.1
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo... 28 2.0
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 27 3.4
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces... 27 3.4
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 27 4.5
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 27 4.5
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi... 26 6.0
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 26 7.9
>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 163
Score = 35.9 bits (79), Expect = 0.007
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +2
Query: 344 RIKDILFSALAFPLSVFVGITFWGIYAIDRELILPRSLDPYFPTWLNHVMHTNIMAFILI 523
++K+IL + PL V I +W I + DR L++P+ P + +H + LI
Sbjct: 17 KLKNILLYIVC-PLETIVSILYWSIVSYDRSLLIPKDRPVPLPLNFDISVHLMPTVYTLI 75
Query: 524 DLL 532
D L
Sbjct: 76 DYL 78
Score = 31.9 bits (69), Expect = 0.12
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 570 LSVLCTYMLCYMVWIHVIYFKTGSWVYPILNILNWPLRVVFYLV 701
L V + + YM+W+ Y + YPIL IL+ + +FY V
Sbjct: 92 LLVYLSIAVSYMLWVEKCYQMNKFYAYPILAILDPIKKTIFYTV 135
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 28.7 bits (61), Expect = 1.1
Identities = 20/60 (33%), Positives = 27/60 (45%)
Frame = +2
Query: 350 KDILFSALAFPLSVFVGITFWGIYAIDRELILPRSLDPYFPTWLNHVMHTNIMAFILIDL 529
K ILFS L F V++ FW + L+ YFP W H+ + A IL +L
Sbjct: 273 KQILFSLLYFSSEVYLSFVFWSVLTSLGLLVW------YFPLW--HMGISGYEACILFEL 324
>SPCC553.12c ||SPCC794.13|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 521
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/64 (20%), Positives = 29/64 (45%)
Frame = +2
Query: 473 TWLNHVMHTNIMAFILIDLLTSFRNVS*EENWTICTLYIYVVLHGLDSCNIF*NWKLGVS 652
+W V+ ++ +I+ + LT+ + + T+ +Y+Y + CN+ +W L
Sbjct: 264 SWFIVVLLVTLLVYIVGEYLTNLYMSTLPHSSTVAIMYVYSWTGTVSLCNLVSSWILNTK 323
Query: 653 YTEY 664
Y
Sbjct: 324 THSY 327
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 27.1 bits (57), Expect = 3.4
Identities = 16/61 (26%), Positives = 24/61 (39%)
Frame = +2
Query: 101 PTMLKILFHLLGAIHFGYGCYYDQVHVNVPSTSAIVTPYAGKMKYLTHLNAIMQTLYFTL 280
P M+ G + YY VH VP+ S + T + +L LN ++ F
Sbjct: 448 PMMIGCFMFPAGIFWLSWSGYYSYVHWIVPTLSGLATGCGILLIFLQCLNYLIDAYLFRA 507
Query: 281 A 283
A
Sbjct: 508 A 508
>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 580
Score = 27.1 bits (57), Expect = 3.4
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = +2
Query: 101 PTMLKILFHLLGAIHFGYGCYYDQVHVNVPSTSAIVTPYAGKMKYLTHLNAIMQTLYFTL 280
P M+ G + YY VH VP+ S ++T + +L LN ++ F
Sbjct: 452 PMMIGSFLFPAGIFWLAWSGYYTYVHWIVPTLSGLLTGAGILLIFLQCLNYLLDAYLFRA 511
Query: 281 A 283
A
Sbjct: 512 A 512
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 392 FVGITFWGIYAIDRELILPRSLD 460
++ TFW IY + LILP SLD
Sbjct: 317 YITSTFWIIYLLYVWLILPESLD 339
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 627 FKTGSWVYPILNILNWPLRVVFYL 698
F GSW P+LN L++P V +L
Sbjct: 293 FVLGSWKSPLLNALHYPFPSVGFL 316
>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
Tim44|Schizosaccharomyces pombe|chr 2|||Manual
Length = 427
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -3
Query: 414 PQNVIPTNTDSGKAKALNNISFMRLIKGFSDGVGSLFPNKSFKSANVKYK 265
PQ+ I D+ +A+ + +K D GSL + +FK A Y+
Sbjct: 32 PQSPIKVFMDTFRAELKKSQELQDSVKALQDSSGSLSESDTFKKARDAYE 81
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 564 IGLSVLCTYMLCYMVWIHVIYF 629
+ LS LCT+ C M I + YF
Sbjct: 489 VTLSYLCTFTCCIMTIIRINYF 510
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,573,299
Number of Sequences: 5004
Number of extensions: 80158
Number of successful extensions: 241
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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