Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_J21
(863 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81046-2|CAB02824.1| 295|Caenorhabditis elegans Hypothetical pr... 68 8e-12
Z81046-5|CAB02823.1| 225|Caenorhabditis elegans Hypothetical pr... 63 2e-10
AC199167-2|ABO33246.1| 222|Caenorhabditis elegans Hypothetical ... 54 1e-07
AC199167-1|ABO33247.1| 233|Caenorhabditis elegans Hypothetical ... 54 1e-07
AL117207-3|CAB60391.1| 331|Caenorhabditis elegans Hypothetical ... 32 0.46
AL132862-30|CAB60565.3| 716|Caenorhabditis elegans Hypothetical... 30 2.4
AL110500-13|CAB54495.1| 791|Caenorhabditis elegans Hypothetical... 29 3.2
U41556-10|AAM51520.1| 415|Caenorhabditis elegans Hypothetical p... 29 4.3
Z68316-6|CAA92682.2| 357|Caenorhabditis elegans Hypothetical pr... 29 5.7
AL021448-2|CAA16277.2| 339|Caenorhabditis elegans Hypothetical ... 28 9.9
AF024503-9|AAG24084.1| 327|Caenorhabditis elegans Serpentine re... 28 9.9
>Z81046-2|CAB02824.1| 295|Caenorhabditis elegans Hypothetical
protein C37E2.3 protein.
Length = 295
Score = 68.1 bits (159), Expect = 8e-12
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Frame = +2
Query: 215 YAGKMKYLTHLNAIMQTLYFTLALLNDLFGNNEPTPSEKPLIRRIKDILFSALAFPLSVF 394
Y K+ LT+L ++ +Y TL ++ G T I+ + D + FP++V
Sbjct: 114 YIYKLILLTNLAFVLNVVYSTLVVI----GYKSKT------IKEVVDFMHFTAMFPVAVI 163
Query: 395 VGITFWGIYAIDRELILPRSLDPYFPTWLNHVMHTNIMAFILIDLLTSFRNV-S*EENWT 571
+ FWG Y D +L++P + P+WLNH+ HT ++ FIL+D R+ S +W
Sbjct: 164 LCGMFWGFYVYDSDLVMPAWVAEIVPSWLNHINHTYLIVFILLDSYYHKRDAPSNSTSWM 223
Query: 572 ICTLYI 589
I +Y+
Sbjct: 224 ISVVYV 229
>Z81046-5|CAB02823.1| 225|Caenorhabditis elegans Hypothetical
protein C37E2.2a protein.
Length = 225
Score = 63.3 bits (147), Expect = 2e-10
Identities = 34/104 (32%), Positives = 55/104 (52%)
Frame = +2
Query: 215 YAGKMKYLTHLNAIMQTLYFTLALLNDLFGNNEPTPSEKPLIRRIKDILFSALAFPLSVF 394
Y K+ LT+LN ++ Y + LL SEK +++I D + FP+ +
Sbjct: 35 YVYKLVMLTNLNFVLCVFYSVMILLG--------YKSEK--LQKISDFMHFTSIFPVGMI 84
Query: 395 VGITFWGIYAIDRELILPRSLDPYFPTWLNHVMHTNIMAFILID 526
FWG+YAI+ L++P + P+WLNH+ HT + FI++D
Sbjct: 85 TCGLFWGLYAINPALVMPDWIAKLIPSWLNHITHTYPIIFIILD 128
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +3
Query: 552 PRKKIGLSVLCTYMLCYMVWIHVIYFKTGSWVYPILNILNWPLRVVFYLV 701
P+ L + Y + I + F G W+YPIL++ + V+ Y++
Sbjct: 137 PKTIASLIFSAALVFVYFMIICYVRFFDGYWLYPILSLFAFEHFVISYII 186
>AC199167-2|ABO33246.1| 222|Caenorhabditis elegans Hypothetical
protein cTel55X.1a protein.
Length = 222
Score = 54.4 bits (125), Expect = 1e-07
Identities = 43/178 (24%), Positives = 83/178 (46%), Gaps = 4/178 (2%)
Frame = +2
Query: 107 MLKILFHLLGAIHFGYGCYYDQVHVNVPSTSAIVTPYA--GKMKYLTHLNAIMQTLYFTL 280
M+K++FHL+ A+ + CY D + + + + PY + +LT ++ MQ LY T+
Sbjct: 1 MIKVIFHLVSAVLYAAVCYRD---TTIVTGALLPIPYQTWSRFVWLTIIDLYMQLLYHTI 57
Query: 281 ALLNDLFGNNEPTPSEKPLIRRIKDILFSALAFPLSVFVGITFWGIYAIDRELILPRSLD 460
+ + +P+++ + I D AL P+ V V + FWG++ D + +
Sbjct: 58 GFILAVV-----SPNKRHI---IFDYWARALTGPIGVAVTVLFWGLFLFDPATLARDEMA 109
Query: 461 PYFPT--WLNHVMHTNIMAFILIDLLTSFRNVS*EENWTICTLYIYVVLHGLDSCNIF 628
T W NH +HT +D L + + S + + + ++V L+ +D +F
Sbjct: 110 MKILTLFWFNHGLHTLPAITAHLD-LAIYNHTSFSTSAILKGIAVFVTLYLIDLHYVF 166
Score = 44.0 bits (99), Expect = 1e-04
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +3
Query: 570 LSVLCTYMLCYMVWIHVIYFKTGSWVYPILNILNWPLRVVFYLVCLGLV 716
L + ++ Y++ +H +++ +G W YPIL L P R+VF C+ +V
Sbjct: 148 LKGIAVFVTLYLIDLHYVFYTSGFWAYPILGELAAPFRLVFIAACMFIV 196
>AC199167-1|ABO33247.1| 233|Caenorhabditis elegans Hypothetical
protein cTel55X.1b protein.
Length = 233
Score = 54.0 bits (124), Expect = 1e-07
Identities = 46/188 (24%), Positives = 86/188 (45%), Gaps = 7/188 (3%)
Frame = +2
Query: 107 MLKILFHLLGAIHFGYGCYYDQVHVNVPSTSAIVTPYA--GKMKYLTHLNAIMQTLYFTL 280
M+K++FHL+ A+ + CY D + + + + PY + +LT ++ MQ LY T+
Sbjct: 1 MIKVIFHLVSAVLYAAVCYRD---TTIVTGALLPIPYQTWSRFVWLTIIDLYMQLLYHTI 57
Query: 281 ALLNDLFGNNEPTPSEKPLIRRIKDILFSALAFPLSVFVGITFWGIYAIDRELILPRSLD 460
+ + +P+++ + I D AL P+ V V + FWG++ D + +
Sbjct: 58 GFILAVV-----SPNKRHI---IFDYWARALTGPIGVAVTVLFWGLFLFDPATLARDEMA 109
Query: 461 PYFPT--WLNHVMHTNIMAFILIDLLTSFRNVS*EENWTICTLYIYVVLHGLD---SCNI 625
T W NH +HT +D L + + S + + + ++V L+ +D +
Sbjct: 110 MKILTLFWFNHGLHTLPAITAHLD-LAIYNHTSFSTSAILKGIAVFVTLYLIDFQPPLRL 168
Query: 626 F*NWKLGV 649
W LGV
Sbjct: 169 LHFWLLGV 176
>AL117207-3|CAB60391.1| 331|Caenorhabditis elegans Hypothetical
protein Y60A3A.3 protein.
Length = 331
Score = 32.3 bits (70), Expect = 0.46
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Frame = +2
Query: 62 VHSPNTYIYLNKEPTMLK------ILFHLLGAIHFGYGCYYDQVHVNVPSTS 199
VH YI L K PT +K +L HL+GA GY ++ +N+P+ S
Sbjct: 31 VHGFGVYIILAKTPTKMKSVKGNMLLLHLVGACVDGYISFFTSPVLNLPACS 82
>AL132862-30|CAB60565.3| 716|Caenorhabditis elegans Hypothetical
protein Y73F8A.1 protein.
Length = 716
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -3
Query: 294 SFKSANVKYKVCIIAFKWVKYFIFPAYGVTMAEVLGTFT 178
S +++ + K C++ WVK F F + TM+++ T T
Sbjct: 404 SSENSYLNIKACVVFVAWVKVFKFISVNKTMSQLSSTLT 442
>AL110500-13|CAB54495.1| 791|Caenorhabditis elegans Hypothetical
protein Y87G2A.12 protein.
Length = 791
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 581 LYIYVVLHGLDSCNIF*NW 637
LYI+ + HGL +CN+F W
Sbjct: 712 LYIFSIPHGLSTCNVFSIW 730
>U41556-10|AAM51520.1| 415|Caenorhabditis elegans Hypothetical
protein C25B8.7 protein.
Length = 415
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 564 IGLSVLCTYMLCYMVWIHVIYFKTGSWVYPILNILNWPLRVVF 692
I +S + CY+ WI I F T W+Y + +N + + F
Sbjct: 163 IWMSYFRAKLFCYLSWIISIGFATYYWMYSYMYFVNATVDIQF 205
>Z68316-6|CAA92682.2| 357|Caenorhabditis elegans Hypothetical
protein K08E4.5 protein.
Length = 357
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +3
Query: 558 KKIGLSVLCTYMLCYMVWIHVIYFKTGSWVYPILNILNW 674
K+I + + Y+ WI +I+F T W Y + W
Sbjct: 234 KEISTVISINSVNYYLFWISIIHFSTSFWYYFSVETKQW 272
>AL021448-2|CAA16277.2| 339|Caenorhabditis elegans Hypothetical
protein Y2H9A.2 protein.
Length = 339
Score = 27.9 bits (59), Expect = 9.9
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +2
Query: 338 IRRIKDILFSALAFPLSVFVGITFWGIYAIDRELILPRSLDPYFPTWLNHVMHTNIMAFI 517
+ R+K + L S+F G+TFW +A E+ILP + +FP + N T ++ I
Sbjct: 122 LTRLKLVKIVLLILIPSLFQGLTFWTSFA-PLEIILPLA-KKWFPQY-NFEAETGVLTGI 178
Query: 518 L 520
+
Sbjct: 179 V 179
>AF024503-9|AAG24084.1| 327|Caenorhabditis elegans Serpentine
receptor, class h protein266 protein.
Length = 327
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +3
Query: 576 VLCTYMLCYMVWIHVIYFKTGSWVYPILNILNWPLRVVFYLVCLGLVVV 722
+LC +ML M ++++ + IL + P+ + YLV +G+ V
Sbjct: 52 ILCDWMLAVMTIPYLLFPAMVGFPLGILKYFDVPIDIQVYLVAVGITAV 100
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,479,222
Number of Sequences: 27780
Number of extensions: 436546
Number of successful extensions: 1160
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -