Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_J20
         (916 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.078
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 0.078
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +3

Query: 183 PPGXGXPPXRGGGXPPXXKAPXXXGXPPPPNXXXXXP 293
           P G   PP  G   PP        G PP PN     P
Sbjct: 404 PAGGQLPPSAGAPMPPIPNMSNMSGMPPLPNMPGSMP 440



 Score = 28.3 bits (60), Expect = 0.10
 Identities = 12/34 (35%), Positives = 13/34 (38%)
 Frame = +2

Query: 641 PXRGPXPPXXXPPPXPXQXXPPPPPGGGXXXXXP 742
           P + P  P    PP P Q  PP  P G      P
Sbjct: 27  PHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 26.2 bits (55), Expect = 0.42
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +3

Query: 603 PPPPXGXGPXKPPXGAGPXPQXXPPP 680
           P P     P  P  G+ P P   PPP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPP 48



 Score = 25.0 bits (52), Expect = 0.96
 Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 5/29 (17%)
 Frame = +2

Query: 650 GPXPPXXXPPPXPXQXXPP-----PPPGG 721
           GP P     P  P +  PP     PPPGG
Sbjct: 22  GPQPSPHQSPQAPQRGSPPNPSQGPPPGG 50



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +2

Query: 845 PGXAPPPXXSXGXXPGXPP 901
           P    PP  S G  PG PP
Sbjct: 34  PQRGSPPNPSQGPPPGGPP 52



 Score = 21.8 bits (44), Expect = 8.9
 Identities = 11/38 (28%), Positives = 12/38 (31%)
 Frame = +3

Query: 606 PPPXGXGPXKPPXGAGPXPQXXPPPXAXXKXXPPPPXG 719
           P     GP   P  +   PQ   PP       P  P G
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPG 53


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 658 PPKXXPPPXPXXKXAP 705
           PPK  PPP P     P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 5.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 600 PPPPPXGXGP 629
           PPPPP   GP
Sbjct: 344 PPPPPSSSGP 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.157    0.565 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 267,005
Number of Sequences: 438
Number of extensions: 12273
Number of successful extensions: 15
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)