Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_J19
         (921 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    27   0.60 
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            26   1.8  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    23   9.8  

>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 27.5 bits (58), Expect = 0.60
 Identities = 19/61 (31%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
 Frame = +3

Query: 654 GPPPXXKXSKNFPPXFXGGXX-PPGXXKXTXXFXPPXKXPXXXPPLFPXPXPXXQKXXXP 830
           GPP     ++  PP   G    PPG         PP   P   P + P P P  Q    P
Sbjct: 199 GPPRTGTPTQPQPPRPGGMYPQPPGVPMPMRPQMPPGAVPGMQPGMQPRP-PSAQGMQRP 257

Query: 831 P 833
           P
Sbjct: 258 P 258


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 21/68 (30%), Positives = 21/68 (30%)
 Frame = +3

Query: 648 PXGPPPXXKXSKNFPPXFXGGXXPPGXXKXTXXFXPPXKXPXXXPPLFPXPXPXXQKXXX 827
           P  PPP      N PP F     PP        F P        P  FP   P  Q    
Sbjct: 530 PPPPPPPGGAVLNIPPQF----LPPPLNLLRAPFFPLNPAQLRFPAGFPN-LPNAQPPPA 584

Query: 828 PPFFPXXG 851
           PP  P  G
Sbjct: 585 PPPPPPMG 592


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -3

Query: 514 SPXPKPGXXGFXGGERXXGPKXKXXXPGGXG 422
           +P P PG  G  G +   GPK     PG  G
Sbjct: 147 TPGP-PGYPGDVGPKGEPGPKGPAGHPGAPG 176


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 469,116
Number of Sequences: 2352
Number of extensions: 7214
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 100055142
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)