Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_J19
(921 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.38
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.38
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.38
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 32 0.66
Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical pr... 32 0.66
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 32 0.66
U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protei... 31 1.2
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.5
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.5
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.5
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 30 2.7
AL117203-5|CAB55107.1| 291|Caenorhabditis elegans Hypothetical ... 30 2.7
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 30 2.7
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 30 2.7
Z34533-1|CAA84302.3| 730|Caenorhabditis elegans Hypothetical pr... 29 3.5
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 29 3.5
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 3.5
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 29 3.5
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 29 3.5
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 29 3.5
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 29 3.5
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 29 4.7
U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protei... 29 4.7
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 29 4.7
Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical pr... 29 6.2
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 28 8.2
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 28 8.2
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 32.7 bits (71), Expect = 0.38
Identities = 26/83 (31%), Positives = 27/83 (32%), Gaps = 3/83 (3%)
Frame = +3
Query: 678 SKNFPPXFXGGXXPPGXXKXTXXFXPPXKXPXXXPPLFPXPXPXXQKXXXPPFF---PXX 848
S PP G PPG T PP P PP+ P P PP P
Sbjct: 703 SSALPPITGGPPPPPGLPPITGG-PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 761
Query: 849 GXXXGXFF*KXPXXXXFPPPPGG 917
G P PPPPGG
Sbjct: 762 PPPPGGCPPPPP-----PPPPGG 779
Score = 32.7 bits (71), Expect = 0.38
Identities = 21/63 (33%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Frame = +3
Query: 654 GPPPXXKXSKNFPPXFXGGXXPP---GXXKXTXXFXPPXKXPXXXPPLFPXPXPXXQKXX 824
GPPP PP G PP G + PP P PP P P P K
Sbjct: 725 GPPPPPPPG-GLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
Query: 825 XPP 833
PP
Sbjct: 784 PPP 786
Score = 31.9 bits (69), Expect = 0.66
Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Frame = +2
Query: 656 PPPPXXXXKKF----PPXFXRGGXPPXGXXKXPXVSPPXKXPPXXXPP 787
PPPP PP GG PP P PP PP PP
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 775
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 32.7 bits (71), Expect = 0.38
Identities = 26/83 (31%), Positives = 27/83 (32%), Gaps = 3/83 (3%)
Frame = +3
Query: 678 SKNFPPXFXGGXXPPGXXKXTXXFXPPXKXPXXXPPLFPXPXPXXQKXXXPPFF---PXX 848
S PP G PPG T PP P PP+ P P PP P
Sbjct: 703 SSALPPITGGPPPPPGLPPITGG-PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 761
Query: 849 GXXXGXFF*KXPXXXXFPPPPGG 917
G P PPPPGG
Sbjct: 762 PPPPGGCPPPPP-----PPPPGG 779
Score = 32.7 bits (71), Expect = 0.38
Identities = 21/63 (33%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Frame = +3
Query: 654 GPPPXXKXSKNFPPXFXGGXXPP---GXXKXTXXFXPPXKXPXXXPPLFPXPXPXXQKXX 824
GPPP PP G PP G + PP P PP P P P K
Sbjct: 725 GPPPPPPPG-GLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
Query: 825 XPP 833
PP
Sbjct: 784 PPP 786
Score = 31.9 bits (69), Expect = 0.66
Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Frame = +2
Query: 656 PPPPXXXXKKF----PPXFXRGGXPPXGXXKXPXVSPPXKXPPXXXPP 787
PPPP PP GG PP P PP PP PP
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 775
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 32.7 bits (71), Expect = 0.38
Identities = 26/83 (31%), Positives = 27/83 (32%), Gaps = 3/83 (3%)
Frame = +3
Query: 678 SKNFPPXFXGGXXPPGXXKXTXXFXPPXKXPXXXPPLFPXPXPXXQKXXXPPFF---PXX 848
S PP G PPG T PP P PP+ P P PP P
Sbjct: 286 SSALPPITGGPPPPPGLPPITGG-PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 344
Query: 849 GXXXGXFF*KXPXXXXFPPPPGG 917
G P PPPPGG
Sbjct: 345 PPPPGGCPPPPP-----PPPPGG 362
Score = 32.7 bits (71), Expect = 0.38
Identities = 21/63 (33%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Frame = +3
Query: 654 GPPPXXKXSKNFPPXFXGGXXPP---GXXKXTXXFXPPXKXPXXXPPLFPXPXPXXQKXX 824
GPPP PP G PP G + PP P PP P P P K
Sbjct: 308 GPPPPPPPG-GLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 366
Query: 825 XPP 833
PP
Sbjct: 367 PPP 369
Score = 31.9 bits (69), Expect = 0.66
Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Frame = +2
Query: 656 PPPPXXXXKKF----PPXFXRGGXPPXGXXKXPXVSPPXKXPPXXXPP 787
PPPP PP GG PP P PP PP PP
Sbjct: 311 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 358
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 31.9 bits (69), Expect = 0.66
Identities = 26/102 (25%), Positives = 27/102 (26%)
Frame = -3
Query: 727 SPGGXSPPXKXGGKFFXXXXXGGGPXGKNXXXGAXXXXXXXXGPXGKXXFXGXTPXFGXN 548
+PG P G G GP G G P G G
Sbjct: 141 APGAPGPQGPSGAPGQDAVGEGPGPAGPQGPAGDAGAPGQAGAP-GHPGAPGQGGQRSRG 199
Query: 547 PFTPXGGXXTXSPXPKPGXXGFXGGERXXGPKXKXXXPGGXG 422
P G P PG G GG GP PGG G
Sbjct: 200 TPGPAGAPGPQGPAGGPGQPGQSGGAGAPGPAGAPGAPGGPG 241
>Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.4 protein.
Length = 290
Score = 31.9 bits (69), Expect = 0.66
Identities = 26/102 (25%), Positives = 27/102 (26%)
Frame = -3
Query: 727 SPGGXSPPXKXGGKFFXXXXXGGGPXGKNXXXGAXXXXXXXXGPXGKXXFXGXTPXFGXN 548
+PG P G G GP G G P G G
Sbjct: 141 APGAPGPQGPSGAPGQDAVGGGPGPAGPQGPAGDAGAPGQAGAP-GHPGAPGQGGQRSRG 199
Query: 547 PFTPXGGXXTXSPXPKPGXXGFXGGERXXGPKXKXXXPGGXG 422
P G P PG G GG GP PGG G
Sbjct: 200 TPGPSGAPGPQGPAGGPGQPGQSGGAGAPGPAGAPGAPGGPG 241
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 31.9 bits (69), Expect = 0.66
Identities = 16/48 (33%), Positives = 17/48 (35%)
Frame = +1
Query: 658 PPPXXXXQKISPPXXXGGXXPXGXXKXPXGFXPXXXPPXXXPPFFPXP 801
P P Q P G P G + P GF P P PP P P
Sbjct: 718 PGPPGPQQHPGPYPGYPGYGPPGAMRPPAGFAPPPGAPYGYPPGAPPP 765
>U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protein
20 protein.
Length = 288
Score = 31.1 bits (67), Expect = 1.2
Identities = 29/101 (28%), Positives = 32/101 (31%)
Frame = -3
Query: 724 PGGXSPPXKXGGKFFXXXXXGGGPXGKNXXXGAXXXXXXXXGPXGKXXFXGXTPXFGXNP 545
PG PP GG GGP G G P G+ G NP
Sbjct: 155 PGPKGPPGPPGGHGEPGPAGRGGPRGPPGPGG----------PQGEAGEDGGA----GNP 200
Query: 544 FTPXGGXXTXSPXPKPGXXGFXGGERXXGPKXKXXXPGGXG 422
TP SP +PG G GG G + PG G
Sbjct: 201 GTPGQVRSLPSPPGEPGQPGEPGGPGEPGADGRPGHPGRAG 241
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.7 bits (66), Expect = 1.5
Identities = 26/95 (27%), Positives = 26/95 (27%), Gaps = 6/95 (6%)
Frame = +3
Query: 648 PXGPPPXXKXSKNFPPXFXGGXXPP------GXXKXTXXFXPPXKXPXXXPPLFPXPXPX 809
P G PP K PP G PP T PP PP P P
Sbjct: 233 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 292
Query: 810 XQKXXXPPFFPXXGXXXGXFF*KXPXXXXFPPPPG 914
PP P G P PPP G
Sbjct: 293 RAGSPPPPPPPRGSPPTGSL--PPPQAGGSPPPAG 325
Score = 29.1 bits (62), Expect = 4.7
Identities = 27/112 (24%), Positives = 29/112 (25%), Gaps = 3/112 (2%)
Frame = +2
Query: 461 PXPFPPXKTPXPXFWGGGXGXXXPXGGKXVXPKXXGXPXKXXFTXXXXXXXXXXXXXXXX 640
P P PP K P G G P G P+ P T
Sbjct: 237 PPPPPPPKGSPPLA-GSGSPPPPPAAGSPPPPRTGSPPPPP--TGSPPPPPAGGSPPPPR 293
Query: 641 VFXXRPPPPXXXXK---KFPPXFXRGGXPPXGXXKXPXVSPPXKXPPXXXPP 787
PPPP PP G PP G P + P PP
Sbjct: 294 AGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPP 345
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/45 (37%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Frame = +2
Query: 659 PPPXXXXKKFPPXFXRGGXPPXGXXKX--PXVSPPXKXPPXXXPP 787
PPP PP G PP K P SPP PP PP
Sbjct: 313 PPPQAGGS--PPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPP 355
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.7 bits (66), Expect = 1.5
Identities = 26/95 (27%), Positives = 26/95 (27%), Gaps = 6/95 (6%)
Frame = +3
Query: 648 PXGPPPXXKXSKNFPPXFXGGXXPP------GXXKXTXXFXPPXKXPXXXPPLFPXPXPX 809
P G PP K PP G PP T PP PP P P
Sbjct: 254 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 313
Query: 810 XQKXXXPPFFPXXGXXXGXFF*KXPXXXXFPPPPG 914
PP P G P PPP G
Sbjct: 314 RAGSPPPPPPPRGSPPTGSL--PPPQAGGSPPPAG 346
Score = 29.1 bits (62), Expect = 4.7
Identities = 27/112 (24%), Positives = 29/112 (25%), Gaps = 3/112 (2%)
Frame = +2
Query: 461 PXPFPPXKTPXPXFWGGGXGXXXPXGGKXVXPKXXGXPXKXXFTXXXXXXXXXXXXXXXX 640
P P PP K P G G P G P+ P T
Sbjct: 258 PPPPPPPKGSPPLA-GSGSPPPPPAAGSPPPPRTGSPPPPP--TGSPPPPPAGGSPPPPR 314
Query: 641 VFXXRPPPPXXXXK---KFPPXFXRGGXPPXGXXKXPXVSPPXKXPPXXXPP 787
PPPP PP G PP G P + P PP
Sbjct: 315 AGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPP 366
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/45 (37%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Frame = +2
Query: 659 PPPXXXXKKFPPXFXRGGXPPXGXXKX--PXVSPPXKXPPXXXPP 787
PPP PP G PP K P SPP PP PP
Sbjct: 334 PPPQAGGS--PPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPP 376
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.7 bits (66), Expect = 1.5
Identities = 26/95 (27%), Positives = 26/95 (27%), Gaps = 6/95 (6%)
Frame = +3
Query: 648 PXGPPPXXKXSKNFPPXFXGGXXPP------GXXKXTXXFXPPXKXPXXXPPLFPXPXPX 809
P G PP K PP G PP T PP PP P P
Sbjct: 239 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 298
Query: 810 XQKXXXPPFFPXXGXXXGXFF*KXPXXXXFPPPPG 914
PP P G P PPP G
Sbjct: 299 RAGSPPPPPPPRGSPPTGSL--PPPQAGGSPPPAG 331
Score = 29.1 bits (62), Expect = 4.7
Identities = 27/112 (24%), Positives = 29/112 (25%), Gaps = 3/112 (2%)
Frame = +2
Query: 461 PXPFPPXKTPXPXFWGGGXGXXXPXGGKXVXPKXXGXPXKXXFTXXXXXXXXXXXXXXXX 640
P P PP K P G G P G P+ P T
Sbjct: 243 PPPPPPPKGSPPLA-GSGSPPPPPAAGSPPPPRTGSPPPPP--TGSPPPPPAGGSPPPPR 299
Query: 641 VFXXRPPPPXXXXK---KFPPXFXRGGXPPXGXXKXPXVSPPXKXPPXXXPP 787
PPPP PP G PP G P + P PP
Sbjct: 300 AGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPP 351
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/45 (37%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Frame = +2
Query: 659 PPPXXXXKKFPPXFXRGGXPPXGXXKX--PXVSPPXKXPPXXXPP 787
PPP PP G PP K P SPP PP PP
Sbjct: 319 PPPQAGGS--PPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPP 361
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/52 (30%), Positives = 20/52 (38%)
Frame = -3
Query: 910 GGGGKXXXXGXF*KXXPXXXPXXGKXGGKXXFXKXGXGWGKRGGXXXGXFXG 755
GGGG G + P G G G GWG++GG G + G
Sbjct: 222 GGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGG 273
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/75 (26%), Positives = 27/75 (36%)
Frame = -3
Query: 913 PGGGGKXXXXGXF*KXXPXXXPXXGKXGGKXXFXKXGXGWGKRGGXXXGXFXGGXNXWVF 734
PGGGG+ G + G + G GWG++GG G + G
Sbjct: 244 PGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQ---- 299
Query: 733 XXSPGGXSPPXKXGG 689
GG P + GG
Sbjct: 300 -QQQGGWGGPQQGGG 313
>AL117203-5|CAB55107.1| 291|Caenorhabditis elegans Hypothetical
protein Y48C3A.8 protein.
Length = 291
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +2
Query: 659 PPPXXXXKKFPPXFXRGGXPPXGXXKXPXV-SPPXKXPPXXXPPF 790
PPP + FP GG P G + SP PP PPF
Sbjct: 13 PPPGGGAQPFPGASGSGGMMPNGAHPHMSLNSPSMGVPPADMPPF 57
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/52 (30%), Positives = 20/52 (38%)
Frame = -3
Query: 910 GGGGKXXXXGXF*KXXPXXXPXXGKXGGKXXFXKXGXGWGKRGGXXXGXFXG 755
GGGG G + P G G G GWG++GG G + G
Sbjct: 184 GGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGG 235
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/75 (26%), Positives = 27/75 (36%)
Frame = -3
Query: 913 PGGGGKXXXXGXF*KXXPXXXPXXGKXGGKXXFXKXGXGWGKRGGXXXGXFXGGXNXWVF 734
PGGGG+ G + G + G GWG++GG G + G
Sbjct: 206 PGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQ---- 261
Query: 733 XXSPGGXSPPXKXGG 689
GG P + GG
Sbjct: 262 -QQQGGWGGPQQGGG 275
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/52 (30%), Positives = 20/52 (38%)
Frame = -3
Query: 910 GGGGKXXXXGXF*KXXPXXXPXXGKXGGKXXFXKXGXGWGKRGGXXXGXFXG 755
GGGG G + P G G G GWG++GG G + G
Sbjct: 222 GGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGG 273
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/75 (26%), Positives = 27/75 (36%)
Frame = -3
Query: 913 PGGGGKXXXXGXF*KXXPXXXPXXGKXGGKXXFXKXGXGWGKRGGXXXGXFXGGXNXWVF 734
PGGGG+ G + G + G GWG++GG G + G
Sbjct: 244 PGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQ---- 299
Query: 733 XXSPGGXSPPXKXGG 689
GG P + GG
Sbjct: 300 -QQQGGWGGPQQGGG 313
>Z34533-1|CAA84302.3| 730|Caenorhabditis elegans Hypothetical
protein B0285.1 protein.
Length = 730
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 656 PPPPXXXXKKFPPXFXRGGXPPXGXXKXPXVSPPXKXPPXXXPPFS 793
PPPP F P F + PP ++PP + PP PFS
Sbjct: 189 PPPPSFNINPFQPMFSQPPPPPL-PPNSQFMTPPPRPPP---APFS 230
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 29.5 bits (63), Expect = 3.5
Identities = 29/104 (27%), Positives = 34/104 (32%), Gaps = 3/104 (2%)
Frame = -3
Query: 724 PGGX--SPPXKXGGKFFXXXXXGGGPXGKNXXXGAXXXXXXXXGPXGKXXFXGXTPXFGX 551
PGG PP + G + GP G N G GP G+ G G
Sbjct: 139 PGGCIQCPPGRPGPRGPPGEVGPAGPSGDNGRKGPPGPPGGPGGP-GEGGDGGRPGNPGR 197
Query: 550 -NPFTPXGGXXTXSPXPKPGXXGFXGGERXXGPKXKXXXPGGXG 422
P P G T +PG G G GP + PG G
Sbjct: 198 PGPAGPRGEPGTEYKPGQPGRPGPPGPRGEAGPAGQPGSPGNDG 241
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = +2
Query: 656 PPPPXXXXKKFPPXFXRGGX---PPXGXXKXPXVSPPXKXPPXXXPPFSP 796
PPPP PP R G PP + P +PP + PP PP +P
Sbjct: 122 PPPPP------PPRKSRAGGSSPPPPPPPRVPR-TPPPRSPPPRRPPMTP 164
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 29.5 bits (63), Expect = 3.5
Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Frame = -3
Query: 913 PGGGGKXXXXGXF*KXXPXXXPXXGKXG-GKXXFXKXGXGWGKRGGXXXGXFXGGXNXWV 737
PGGGG+ G G+ G G + G GWG++GG G + G
Sbjct: 206 PGGGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQ--- 262
Query: 736 FXXSPGGXSPPXKXGG 689
GG P + GG
Sbjct: 263 --QQQGGWGGPQQGGG 276
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Frame = -3
Query: 910 GGGGKXXXXGXF*KXXPXXXPXXGKXG-GKXXFXKXGXGWGKRGGXXXGXFXG 755
GGGG G + P G G G G GWG++GG G + G
Sbjct: 184 GGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGGWGG 236
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 29.5 bits (63), Expect = 3.5
Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Frame = -3
Query: 913 PGGGGKXXXXGXF*KXXPXXXPXXGKXG-GKXXFXKXGXGWGKRGGXXXGXFXGGXNXWV 737
PGGGG+ G G+ G G + G GWG++GG G + G
Sbjct: 244 PGGGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQ--- 300
Query: 736 FXXSPGGXSPPXKXGG 689
GG P + GG
Sbjct: 301 --QQQGGWGGPQQGGG 314
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Frame = -3
Query: 910 GGGGKXXXXGXF*KXXPXXXPXXGKXG-GKXXFXKXGXGWGKRGGXXXGXFXG 755
GGGG G + P G G G G GWG++GG G + G
Sbjct: 222 GGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGGWGG 274
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 29.5 bits (63), Expect = 3.5
Identities = 21/76 (27%), Positives = 23/76 (30%), Gaps = 8/76 (10%)
Frame = +3
Query: 630 PFXXFXPXG-----PPPXXKXSKNFPPXFXGGXXPPGXXKXTXXFXPPXKXPXXX---PP 785
PF F P PPP + PP F G PP PP
Sbjct: 292 PFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMFRGGPYPP 351
Query: 786 LFPXPXPXXQKXXXPP 833
FP P P + PP
Sbjct: 352 FFPPPPPHFMRPSSPP 367
Score = 29.1 bits (62), Expect = 4.7
Identities = 22/69 (31%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Frame = +2
Query: 644 FXXRPPPPXXXXKKFPPXFXRGGXPPXGXXKXPXVSPP---XKXPPXXXPPFSPXXXXFX 814
F PPPP PP F G PP P + PP PP P P F
Sbjct: 293 FGFFPPPPRGHFPPPPPHFMGRGMPP------PFMPPPPHFGMGPPRGFMP-PPHPMMFR 345
Query: 815 EXXFXPXFP 841
+ P FP
Sbjct: 346 GGPYPPFFP 354
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 29.5 bits (63), Expect = 3.5
Identities = 21/76 (27%), Positives = 23/76 (30%), Gaps = 8/76 (10%)
Frame = +3
Query: 630 PFXXFXPXG-----PPPXXKXSKNFPPXFXGGXXPPGXXKXTXXFXPPXKXPXXX---PP 785
PF F P PPP + PP F G PP PP
Sbjct: 292 PFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMFRGGPYPP 351
Query: 786 LFPXPXPXXQKXXXPP 833
FP P P + PP
Sbjct: 352 FFPPPPPHFMRPSSPP 367
Score = 29.1 bits (62), Expect = 4.7
Identities = 22/69 (31%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Frame = +2
Query: 644 FXXRPPPPXXXXKKFPPXFXRGGXPPXGXXKXPXVSPP---XKXPPXXXPPFSPXXXXFX 814
F PPPP PP F G PP P + PP PP P P F
Sbjct: 293 FGFFPPPPRGHFPPPPPHFMGRGMPP------PFMPPPPHFGMGPPRGFMP-PPHPMMFR 345
Query: 815 EXXFXPXFP 841
+ P FP
Sbjct: 346 GGPYPPFFP 354
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/46 (34%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Frame = +2
Query: 656 PPPPXXXXKKFPPXFXRGGXPPXGXXKXPXVSPPXK--XPPXXXPP 787
PPPP PP GG PP PP PP PP
Sbjct: 75 PPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPP 120
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 29.1 bits (62), Expect = 4.7
Identities = 31/110 (28%), Positives = 35/110 (31%), Gaps = 9/110 (8%)
Frame = -3
Query: 724 PGGXSPPXKXGGKFFXXXXXGGGPXGKNXXXGAXXXXXXXXGPXGKXXFXGXTPXFGXN- 548
PG PP G K GP G N G GP GK G G N
Sbjct: 143 PGPAGPPGPQGNKGPLGPPGPPGPEGPNGTAG-NKGPAGPPGPGGKPGPAGPPGENGRNG 201
Query: 547 ---PFTPX-----GGXXTXSPXPKPGXXGFXGGERXXGPKXKXXXPGGXG 422
P +P G + P +PG G GG G + PG G
Sbjct: 202 EPQPGSPGEPGRPGQPGSRGPAGQPGKDGAQGGPGEKGANGEPGQPGRDG 251
>U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protein
19 protein.
Length = 289
Score = 29.1 bits (62), Expect = 4.7
Identities = 30/105 (28%), Positives = 32/105 (30%), Gaps = 4/105 (3%)
Frame = -3
Query: 724 PGGX--SPPXKXGGKFFXXXXXGGGPXGKNXXXG--AXXXXXXXXGPXGKXXFXGXTPXF 557
PGG PP + G K GP G N G GP G G
Sbjct: 138 PGGCIKCPPGRPGPKGPSGLPGSAGPAGGNGRRGPPGPVGGPGEQGPQGDAGRPGAAGRP 197
Query: 556 GXNPFTPXGGXXTXSPXPKPGXXGFXGGERXXGPKXKXXXPGGXG 422
G P P G T +PG G G GP PG G
Sbjct: 198 G--PAGPRGEPGTEYKPGQPGRPGPQGPRGETGPAGNPGAPGNDG 240
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 29.1 bits (62), Expect = 4.7
Identities = 31/110 (28%), Positives = 34/110 (30%), Gaps = 9/110 (8%)
Frame = -3
Query: 724 PGGXSPPXKXGGKFFXXXXXGGGPXGKNXXXGAXXXXXXXXGPXGKXXFXGXTPXFGXN- 548
PG PP G K GP G N G GP GK G G N
Sbjct: 145 PGPAGPPGPDGNKGPLGPPGPPGPEGPNGEPG-NKGPAGPPGPGGKPGPAGPPGENGNNG 203
Query: 547 ---PFTPX-----GGXXTXSPXPKPGXXGFXGGERXXGPKXKXXXPGGXG 422
P P G P +PG G GG+ G + PG G
Sbjct: 204 EPQPGAPGEPGQPGQPGQRGPAGEPGKDGSPGGQGEKGASGEPGQPGRDG 253
>Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical
protein Y41E3.2 protein.
Length = 289
Score = 28.7 bits (61), Expect = 6.2
Identities = 25/101 (24%), Positives = 27/101 (26%)
Frame = -3
Query: 724 PGGXSPPXKXGGKFFXXXXXGGGPXGKNXXXGAXXXXXXXXGPXGKXXFXGXTPXFGXNP 545
PG PP + G K GP G G P P P
Sbjct: 152 PGDNGPPGEQGPKGPDAAPGEPGPKGPIGPPGPPGQAGAPGEPGSPAKSEPAVP----GP 207
Query: 544 FTPXGGXXTXSPXPKPGXXGFXGGERXXGPKXKXXXPGGXG 422
P G P PG G G G K + PG G
Sbjct: 208 PGPPGQAGQQGPPGPPGSNGIDGAPGAPGAKGEPGTPGEPG 248
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical
protein Y48E1B.1 protein.
Length = 497
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = +2
Query: 644 FXXRPPPPXXXXKKFPPXFXRGGXPPXGXXKXPXVSPPXKXPPXXXPPFSP 796
F PPPP K P P P +SPP PP PP P
Sbjct: 321 FILPPPPPPM---KLDPSPQPAATPVEITEIPPIISPPAPPPPPPPPPPPP 368
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 28.3 bits (60), Expect = 8.2
Identities = 22/70 (31%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Frame = -3
Query: 850 PXXGKXGGKXXFXKX-GXGWGKR-GGXXXGXFXGGXNXWVFXXSPGGXSPPXKXGGKFFX 677
P G+ GG + G GWG GG G GG N GG GG
Sbjct: 53 PGWGRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGGRG 112
Query: 676 XXXXGGGPXG 647
GGG G
Sbjct: 113 GGGGGGGGRG 122
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,895,471
Number of Sequences: 27780
Number of extensions: 233268
Number of successful extensions: 1123
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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