Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP20_F_J17
(918 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0025 - 25165438-25165708,25165807-25166048,25166191-251662... 130 1e-30
12_01_0284 + 2117288-2117509 127 1e-29
11_01_0276 + 2057486-2057707 127 1e-29
04_01_0500 - 6540769-6541482,6541819-6541877,6541965-6542064,654... 32 0.73
01_03_0005 + 11568545-11569119,11569179-11569191 31 1.3
08_01_0571 - 5088060-5088314,5088826-5088868,5088911-5089137 31 1.7
03_02_0786 - 11169820-11170158,11170245-11170433,11171173-111714... 30 2.2
02_02_0240 + 8196140-8198248,8198381-8198650 30 2.2
01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225 30 3.0
01_07_0384 + 43209423-43210241 29 6.8
10_08_0361 + 17207657-17207701,17208850-17209773 28 9.0
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460... 28 9.0
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 28 9.0
>02_05_0025 -
25165438-25165708,25165807-25166048,25166191-25166222,
25167174-25167231,25167331-25167438
Length = 236
Score = 130 bits (315), Expect = 1e-30
Identities = 56/74 (75%), Positives = 66/74 (89%)
Frame = +1
Query: 157 SKMLEVTCNDRLGKKVRVKCNPDDTVGDLKKLIAAQTGTRYDKIVLKKWYTVFKDHIKLA 336
++M+EV NDRLGKKVRVKCN DDT+GDLKKL+AAQTGTR +KI ++KWY ++KDHI LA
Sbjct: 162 AEMIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLA 221
Query: 337 DYEIHDGMNLELYY 378
DYEIHDGM LELYY
Sbjct: 222 DYEIHDGMGLELYY 235
>12_01_0284 + 2117288-2117509
Length = 73
Score = 127 bits (307), Expect = 1e-29
Identities = 55/72 (76%), Positives = 63/72 (87%)
Frame = +1
Query: 163 MLEVTCNDRLGKKVRVKCNPDDTVGDLKKLIAAQTGTRYDKIVLKKWYTVFKDHIKLADY 342
M+EV NDRLGKKVRVKCN DDT+GDLKKL+AAQTGTR +KI ++KWY ++KDHI L DY
Sbjct: 1 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYNIYKDHITLRDY 60
Query: 343 EIHDGMNLELYY 378
EIHDGM LELYY
Sbjct: 61 EIHDGMGLELYY 72
>11_01_0276 + 2057486-2057707
Length = 73
Score = 127 bits (307), Expect = 1e-29
Identities = 55/72 (76%), Positives = 63/72 (87%)
Frame = +1
Query: 163 MLEVTCNDRLGKKVRVKCNPDDTVGDLKKLIAAQTGTRYDKIVLKKWYTVFKDHIKLADY 342
M+EV NDRLGKKVRVKCN DDT+GDLKKL+AAQTGTR +KI ++KWY ++KDHI L DY
Sbjct: 1 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYNIYKDHITLKDY 60
Query: 343 EIHDGMNLELYY 378
EIHDGM LELYY
Sbjct: 61 EIHDGMGLELYY 72
>04_01_0500 -
6540769-6541482,6541819-6541877,6541965-6542064,
6542113-6542322,6542507-6542765,6544022-6544215
Length = 511
Score = 31.9 bits (69), Expect = 0.73
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -3
Query: 772 EKGPXXAXPPXPRXXGXXFXARKNLPPPPPWTLE 671
E+G PP P R +LPPPPP LE
Sbjct: 25 ERGAGEPPPPLPPPPPGPLQRRSSLPPPPPLDLE 58
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 31.1 bits (67), Expect = 1.3
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = -3
Query: 823 PPXGXXGGQGXHWAGXXEKGPXXAXPPXPRXXGXXFXARKNLPPPP 686
PP G GG G W G PP P F PPPP
Sbjct: 115 PPTGGGGGGGGGWQQGGGGGGAYPTPPPPNPFLPYFPFYYYSPPPP 160
>08_01_0571 - 5088060-5088314,5088826-5088868,5088911-5089137
Length = 174
Score = 30.7 bits (66), Expect = 1.7
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Frame = +1
Query: 166 LEVTCNDRLGKKVRVKCNPDDTVGDLKKLIAAQTGTRYDKIVLKKWYTVFKD----HIKL 333
+++ G + ++ P DT+ D+K I + G R D+ L K L
Sbjct: 92 MQIIVKTLTGITITLEVRPSDTIDDVKAKIQDKVGIRSDQQHLVDVSAGSKQLDDGGSTL 151
Query: 334 ADYEIHDGMNLEL 372
ADY+IHD L L
Sbjct: 152 ADYDIHDESTLHL 164
>03_02_0786 -
11169820-11170158,11170245-11170433,11171173-11171469,
11171568-11171630,11171884-11171997,11173011-11173091,
11173176-11173307,11174265-11174363,11174453-11174530,
11174641-11174901
Length = 550
Score = 30.3 bits (65), Expect = 2.2
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = -3
Query: 763 PXXAXPPXPRXXGXXFXARKNLPPPPPWTLEH 668
P PP P + +PPPPPW +H
Sbjct: 32 PPMGPPPPPPMPPVPVMYLRGVPPPPPWLPQH 63
>02_02_0240 + 8196140-8198248,8198381-8198650
Length = 792
Score = 30.3 bits (65), Expect = 2.2
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +1
Query: 226 DTVGDLKKLIAAQTGTRYDKIVLKKWYTVFKDHIKLADYEIHDGMNLEL 372
DTVG LK+ IA + +K L + KD++ LA Y I G+ + L
Sbjct: 734 DTVGSLKEQIAGELQLPANKQKLSVRTSFLKDNLTLAYYNIGPGVVINL 782
>01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225
Length = 467
Score = 29.9 bits (64), Expect = 3.0
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = -3
Query: 805 GGQGXHWAGXXEKGPXXAXPPXPRXXGXXFXARKNLPPPPP 683
GG G G PP PR G A+ + PPPP
Sbjct: 20 GGGGGGGGGFSPTAAKPPPPPSPRANGTAAAAKPSASPPPP 60
>01_07_0384 + 43209423-43210241
Length = 272
Score = 28.7 bits (61), Expect = 6.8
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -2
Query: 293 STILSYLVPVCAAINFFKSPTVSSGLHLTRTFLPSRSLHVTSSILL 156
ST SY A+IN ++++G H TR L S S TSS L
Sbjct: 216 STSTSYTGTSSASINMTTMISLNNGFHSTRPVLASASTTPTSSSFL 261
>10_08_0361 + 17207657-17207701,17208850-17209773
Length = 322
Score = 28.3 bits (60), Expect = 9.0
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +1
Query: 187 RLGKKVRVKCNPDDTVGDLKKLIAAQTGTRYDKIVLKKWYTVFKDHIKLADYEIHDGMNL 366
++ K + N DTV +K ++A G K + K+ KLADY I ++
Sbjct: 19 KMMKTFTLNVNSTDTVDQIKSKLSAIEGIDKSKQEMFFAGMHLKNEDKLADYNIMTNSSV 78
Query: 367 ELY 375
+LY
Sbjct: 79 DLY 81
>04_04_0799 +
28143878-28145042,28145127-28145290,28146008-28146070,
28146268-28146491,28146850-28147555
Length = 773
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = -3
Query: 790 HWAGXXEKGPXXAXPPXPRXXGXXFXARKNLPPP 689
H+A GP A PP P + AR PPP
Sbjct: 128 HYAYGYGTGPAFAYPPPPASSLQFYYARSRPPPP 161
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/53 (30%), Positives = 17/53 (32%)
Frame = -3
Query: 841 GXXXRXPPXGXXGGQGXHWAGXXEKGPXXAXPPXPRXXGXXFXARKNLPPPPP 683
G R PP G Q GP + PP P G PP PP
Sbjct: 290 GMPPRIPPPPVGGTQPPPPPPPLANGPPRSIPPPPMTGGAMANFTPGAPPRPP 342
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,752,745
Number of Sequences: 37544
Number of extensions: 312855
Number of successful extensions: 999
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -