Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP20_F_J17
         (918 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88173-3|AAK21382.1|   73|Caenorhabditis elegans Ubiquitin-like ...   138   5e-33
AL032626-17|CAA21536.1|  282|Caenorhabditis elegans Hypothetical...    29   3.5  
U80839-3|AAB37909.1|  344|Caenorhabditis elegans Serpentine rece...    28   8.1  

>U88173-3|AAK21382.1|   73|Caenorhabditis elegans Ubiquitin-like
           family protein 5 protein.
          Length = 73

 Score =  138 bits (334), Expect = 5e-33
 Identities = 58/73 (79%), Positives = 67/73 (91%)
 Frame = +1

Query: 163 MLEVTCNDRLGKKVRVKCNPDDTVGDLKKLIAAQTGTRYDKIVLKKWYTVFKDHIKLADY 342
           M+E+T NDRLGKKVR+KCNP DT+GDLKKLIAAQTGTR++KIVLKKWYT++KDHI L DY
Sbjct: 1   MIEITVNDRLGKKVRIKCNPSDTIGDLKKLIAAQTGTRWEKIVLKKWYTIYKDHITLMDY 60

Query: 343 EIHDGMNLELYYQ 381
           EIH+G N ELYYQ
Sbjct: 61  EIHEGFNFELYYQ 73


>AL032626-17|CAA21536.1|  282|Caenorhabditis elegans Hypothetical
           protein Y37D8A.21 protein.
          Length = 282

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -3

Query: 823 PPXGXXGGQGXHWAGXXEKGPXXAXPP 743
           PP    GG G HW    E+GP     P
Sbjct: 157 PPPPLMGGSGGHWRSGGERGPPQYSTP 183


>U80839-3|AAB37909.1|  344|Caenorhabditis elegans Serpentine
           receptor, class h protein72 protein.
          Length = 344

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/63 (26%), Positives = 36/63 (57%)
 Frame = -2

Query: 311 TVYHFLSTILSYLVPVCAAINFFKSPTVSSGLHLTRTFLPSRSLHVTSSILLSNQLSVLL 132
           T Y+F  ++ S+ V    A+NF   PTV   + +   +  + ++HV+ ++L   + S++L
Sbjct: 87  TSYNFYPSLASFSVGYATALNF---PTV---VQICILYTINDAVHVSITLLFEIRSSLIL 140

Query: 131 RNK 123
           +N+
Sbjct: 141 KNR 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,600,551
Number of Sequences: 27780
Number of extensions: 258491
Number of successful extensions: 826
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)